LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci534g0002	ATGATTCAGCACTTCAACGAATCCTACATGTTCGGATTCCATTATCTCTCCGATGACTCTGAACATTCTTCTACCTTAGAAGCAATCCGACAGCACCTTCTCGGAAACGAAACCGCCGACTTGCCTGCCTCTTCTCCGGCAACACTTTCCTACGCCGTCCCATTGCAAGGCCAGAGTTCAATGTATGACATTCATTACATCAATGAACTAGTTCCTGAAGTTTCCACCATTAATAACAGTATCAACGTTGATGCTGTTGTGGCGCGTGAGTGTAACGCGCCCCCAGTTGAACTGCATTACCGGGGTGTTAGGCGACGGCCTTGGGGGAAATACGCGGCAGAGATCAGAGATCCGGCTAAAGACGGTGCTAGGGTTTGGCTGGGAACTTATGATACAGCTGAAGATGCAGCTATAGCTTATGATCGAGCAGCTTATGAGATGCGTGGAGCTAAAGCCAAGCTTAATTTTCCTCTCCTTGTGGGCTCCAACGTGTGGGATTCGGTTCGAGCGAGTCGAAAGCGCCGCGACCTCTCCACAGCCGCTTCTGCTGTCGGCGGCGGCGAGTATTCTTCGAAGCTTAAGCGGATAAGGTTGAGCTAG	600	0.5067	MIQHFNESYMFGFHYLSDDSEHSSTLEAIRQHLLGNETADLPASSPATLSYAVPLQGQSSMYDIHYINELVPEVSTINNSINVDAVVARECNAPPVELHYRGVRRRPWGKYAAEIRDPAKDGARVWLGTYDTAEDAAIAYDRAAYEMRGAKAKLNFPLLVGSNVWDSVRASRKRRDLSTAASAVGGGEYSSKLKRIRLS	199

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci534g0002	199	SMART	rav1_2	99	163	IPR001471	GO:0003700\|GO:0006355
	Prci534g0002	199	FunFam	Ethylene-responsive transcription factor 2	99	158	-	-
	Prci534g0002	199	PRINTS	Ethylene responsive element binding protein signature	100	111	IPR001471	GO:0003700\|GO:0006355
	Prci534g0002	199	PRINTS	Ethylene responsive element binding protein signature	123	139	IPR001471	GO:0003700\|GO:0006355
	Prci534g0002	199	PANTHER	DNA-BINDING DOMAIN	62	172	IPR044808	GO:0003700\|GO:0009873
	Prci534g0002	199	SUPERFAMILY	DNA-binding domain	99	158	IPR016177	GO:0003677
	Prci534g0002	199	ProSiteProfiles	AP2/ERF domain profile.	99	157	IPR001471	GO:0003700\|GO:0006355
	Prci534g0002	199	Gene3D	AP2/ERF domain	99	159	IPR036955	GO:0003700\|GO:0006355
	Prci534g0002	199	CDD	AP2	99	157	IPR001471	GO:0003700\|GO:0006355
	Prci534g0002	199	Pfam	AP2 domain	99	149	IPR001471	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci534g0002	71	175	AP2-EREBP Transcription Factor Family	AT2G44840	58.491	4.92e-37	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Prci534g0002		AP2	8.5e-15	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci534g0002	K09286		-	pcin:129297492	232.261