LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci515g0007	ATGCCTATGATTCGGAGCCTAATCCACGATATGAGATCCAGGTCGCGCCGTGTGGTTCAGGACGGTTCCCCAATGGAGGAGCCTGTGACCGATGGCTTGAAGCAGAGTTCCTGGGTCCACATGCCTCAGGAGCTTCTCAGGGAGGTTTTACTCCGAATTGAGGACTCCGAGAGCTCTTGGCCGCCGCGAAAGAGTGTGGTGGCCTGCGCTGGAGTGTGCCGGAGTTGGAGGGAGATCACCAAGGAAATCGTCAAGCCACCTGAAGTTTCCGCCAAGATCACGTTCCCGATCTCCGTCAAGCAGGTTCCCCGTCCTAGAGATCATCTTCTTCAGTGCTTTATAAGGCGCAACCGGTCCTCCCAAACATATTATTTGTATCTCAATTTAAGTAGTGCTCTAGCTGATGATGGGAAGTTTCTTTTGGCTGCACGCAAGTGCAGGCGTCCGACCTGCACAGATTATGTCATCTCTCTAGATGCTGATGATGTGTCCAATGGAAGCTACACCTATATTGGGAAGCTACGATCAAATTTTCTGGGAACAAAGTTCACAATATATGATGGCCAGCCACCTCATGCAGGCGCAAAAATTTCGAAAAGCCGCTCCACTAGGCTGGTGAATCTGAAGCAAGTTTCACCCCGGGTCCCCACTGGTAACTATCCAGTGGCCCACATTTCATATGAATTAAATGTGTTAGGCTCCAGGGGGCCTCGGAGAATGAATTGTGTCATGGACTCCATTCCTGCCTCTGCAATTGAACCCGGAGGGATAGCGCCGACACAGACTGACTTTTCTCTGAGCAACATTGACATGTTTCCTTCATTTCCATTCTTCCGATCAAAGTCAAATCATATGGAAAAATCCGAATCTGGACCCCTGGGTGATAAAAAAGATGGCGTGCTAGTGCTGAAAAACAAATCTCCAAGGTGGCATGAACAGCTCCAATGTTGGTGCTTAAACTTTCATGGGCGCGTGACGGTAGCTTCAGTAAAAAACTTTCAGCTGGTGGCTTCCCCAGAAAATGGGGTTGCTGGACCAGAACATGAGAAGATCATCCTGCAGTTTGGTAAAGTTGGGAAGGATTTATTTACAATGGATTACCGGTACCCCATCTCGGCATTTCAGGCTTTCGCAATCTGCCTCAGCAGTTTCGATACCAAGATCGCGTGTGAATGA	1176	0.4906	MPMIRSLIHDMRSRSRRVVQDGSPMEEPVTDGLKQSSWVHMPQELLREVLLRIEDSESSWPPRKSVVACAGVCRSWREITKEIVKPPEVSAKITFPISVKQVPRPRDHLLQCFIRRNRSSQTYYLYLNLSSALADDGKFLLAARKCRRPTCTDYVISLDADDVSNGSYTYIGKLRSNFLGTKFTIYDGQPPHAGAKISKSRSTRLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSIPASAIEPGGIAPTQTDFSLSNIDMFPSFPFFRSKSNHMEKSESGPLGDKKDGVLVLKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGVAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci515g0007	391	ProSitePatterns	Tub family signature 1.	321	334	IPR018066	-
	Prci515g0007	391	Pfam	Tub family	103	386	IPR000007	-
	Prci515g0007	391	CDD	F-box_AtTLP-like	38	82	-	-
	Prci515g0007	391	PRINTS	Tubby superfamily signature	303	320	IPR000007	-
	Prci515g0007	391	PRINTS	Tubby superfamily signature	321	337	IPR000007	-
	Prci515g0007	391	PRINTS	Tubby superfamily signature	348	367	IPR000007	-
	Prci515g0007	391	PRINTS	Tubby superfamily signature	170	194	IPR000007	-
	Prci515g0007	391	PRINTS	Tubby superfamily signature	154	170	IPR000007	-
	Prci515g0007	391	PRINTS	Tubby superfamily signature	219	246	IPR000007	-
	Prci515g0007	391	PRINTS	Tubby superfamily signature	369	391	IPR000007	-
	Prci515g0007	391	Gene3D	Tubby Protein; Chain A	97	391	IPR025659	-
	Prci515g0007	391	SUPERFAMILY	Tubby C-terminal domain-like	87	391	IPR025659	-
	Prci515g0007	391	SUPERFAMILY	F-box domain	22	81	IPR036047	GO:0005515
	Prci515g0007	391	PANTHER	TUBBY-RELATED	30	389	-	-
	Prci515g0007	391	Pfam	F-box domain	40	84	IPR001810	GO:0005515
	Prci515g0007	391	ProSitePatterns	Tub family signature 2.	376	391	IPR018066	-
	Prci515g0007	391	Gene3D	-	31	83	-	-
	Prci515g0007	391	FunFam	Tubby-like F-box protein	95	391	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci515g0007	12	391	TUB Transcription Factor Family	AT2G47900	73.890	0.0	561

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Prci515g0007		Tub	6.8e-112	CL0395

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci515g0007	K19600		-	cave:132168101	649.432