Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci508g0002 ATGGAGAAGGAATTGATCCGACTGTACGAAGCGGTGAAGAAAGCGGCGGACGTGGCTGCGGCGGCGACTTCAACCAATAATAGCGAAGTTGAAGAAAATCGATGCCTTGATGCTCTGAAGCAGCTCAAGAAATTTCCTGTCGATTATCAAACTCTTGTATCCACCCAGGTGGGTAAACATGTCAGAGCTCTAACGAAGCATCCAAGAAAAAATATCCGAACTTTCGCTATGGGCGTGGTCGAGATTTGGAAAGCCATAGTCATCAAGGAAATAAACAAAAACAAGAAAGAAAAAGTTGAAGACGAGGTTCAGAATCGGACTGATCATTCGCTGCTAAAGATTAAGGTACAAGATTCACGTGTCAGAGCTGAGAAAACTGTTTCTGCATCAACTGTTAAGCAAGATCCTGAAGCAGCAAAGAAGAAAACTACGATTAAATCTAACGATGCAACACGGGACAGACTGAGGGAAATCCTGCAGGAGGCGTTCTCTAGGGTTTCTGGGGAGGTTGATGATGAAGATGATGAAGCAACCGTGGATCGAGTTAAAGAATGTGACCCGATTAGGGTCTCTGCAGAAGTGGAATCTGCACTATTTCAGAATTGGGGTTGTTTTAAGGGGCCTCAAAAGATCAGGTATAGGTCGTTGATGTTCAACCTCAAGGATCCGAAAAATCCAGATTTTCGAAGAAGGGTTCTGCTCGGAGAAATCGAGCCAGAGAGGCTCGTCTACATGAGAACAGAAGACATGGCTAGTGATGAAAGGAAGAAGGAGATCGAGAAGATCAAAAGGAAAGCCTTGTTTGAGTGTGAGAGAGGACAGAAACTAAAAGCCACAACTGATCAATTCTTCTGCAAGAAATGTGGGAAAAGAGAGTGCACGTATTACCAGATGCAGACTCGCAGTGCTGATGAACCTATGACGGCCTATGTTACTTGTGTCGCATGCAATAACCGTTGGAAGTTCTGCTAG 972 0.4455 MEKELIRLYEAVKKAADVAAAATSTNNSEVEENRCLDALKQLKKFPVDYQTLVSTQVGKHVRALTKHPRKNIRTFAMGVVEIWKAIVIKEINKNKKEKVEDEVQNRTDHSLLKIKVQDSRVRAEKTVSASTVKQDPEAAKKKTTIKSNDATRDRLREILQEAFSRVSGEVDDEDDEATVDRVKECDPIRVSAEVESALFQNWGCFKGPQKIRYRSLMFNLKDPKNPDFRRRVLLGEIEPERLVYMRTEDMASDERKKEIEKIKRKALFECERGQKLKATTDQFFCKKCGKRECTYYQMQTRSADEPMTAYVTCVACNNRWKFC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci508g0002 323 CDD TFIIS_I 24 87 - -
Prci508g0002 323 Pfam TFIIS helical bundle-like domain 38 87 IPR017923 -
Prci508g0002 323 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 20 323 - -
Prci508g0002 323 ProSitePatterns Zinc finger TFIIS-type signature. 285 320 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci508g0002 323 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 27 97 IPR035441 -
Prci508g0002 323 Gene3D - 252 323 - -
Prci508g0002 323 Pfam Transcription factor S-II (TFIIS) 284 321 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci508g0002 323 SMART Cys4_2 283 322 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci508g0002 323 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 103 IPR035441 -
Prci508g0002 323 SMART TFS2_5 8 89 IPR003617 GO:0005634
Prci508g0002 323 NCBIfam transcription elongation factor S-II 14 323 IPR006289 GO:0003676|GO:0005634|GO:0006368
Prci508g0002 323 ProSiteProfiles TFIIS central domain profile. 151 278 IPR003618 GO:0006351
Prci508g0002 323 FunFam Probable Transcription elongation factor S-II 252 323 - -
Prci508g0002 323 Gene3D - 123 251 IPR036575 GO:0006351
Prci508g0002 323 CDD Zn-ribbon_TFIIS 277 322 - -
Prci508g0002 323 PIRSF TFIIS 1 323 IPR035100 -
Prci508g0002 323 SUPERFAMILY Elongation factor TFIIS domain 2 134 254 IPR036575 GO:0006351
Prci508g0002 323 ProSiteProfiles TFIIS N-terminal domain profile. 10 90 IPR017923 -
Prci508g0002 323 ProSiteProfiles Zinc finger TFIIS-type profile. 281 321 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci508g0002 323 Pfam Transcription factor S-II (TFIIS), central domain 148 269 IPR003618 GO:0006351
Prci508g0002 323 SMART mid_6 153 261 IPR003618 GO:0006351
Prci508g0002 323 SUPERFAMILY Zinc beta-ribbon 262 321 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Prci508g0002 TFIIS_M 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci508g0002 K03145 - qsa:O6P43_014856 325.094