Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci508g0001 ATGGAGAAGGAATTGATCCGACTGTACGAAGCGGTGAAGAAAGCGGCGGACGTGGCGGCGGCGTCTTCAACCAATAATAGCGAAGTTGAAGAAAATCGATGCCTTGATGCTCTGAAGCAGCTCAAGAAATTTCCTGTCGATTATCAAACTCTTGTATCCACCCAGGTGGGTAAACATGTCAGAGCTCTAACGAAGCATCCAAGAAAAAATATCCGAACTTTCGCTATGGGCGTGGTCGAGATTTGGAAAGCCATAGTCATCAAGGAAATAAACAAAAACAAGAAAGAAAAAGTTGAAGACGAGGTTCAGAATCGGACTGATCATTCGCTGCTAAAGATTAAGGTACAAGATTCACGTGTCAGAGCTGAGAAAACTGTTTCTGCATCAACTGTTAAGCAAGATCCTGAAGCAGCAAAGAAGAAAACTACGATTAAATCTAACGATGCAACACGGGACAGACTGAGGGAAATCCTGCAGGAGGCGTTCTCTAGGGTTTCTGGGGAGGTTGATGATGAAGATGATGAAGCAACCGTGGATCGAGTTAAAGAATGTGACCCGATTAGGGTCTCTGCAGAAGTGGAATCTGCACTATTTCAGAATTGGGGTTGTTTTAAGGGGCCTCAAAAGATCAGGTATAGGTCGTTGATGTTCAACCTCAAGGATCCGAAAAATCCAGATTTTCGAAGAAGGGTTCTGCTCGGAGAAATCGAGCCAGAGAGGCTCGTCTACATGAGAACAGAAGACATGGCTAGTGATGAAAGGAAGAAGGAGATCGAGAAGATCAAAAGGAAAGCCTTGTTTGAGTGTGAGAGAGGACAGAAACTAAAAGCCACAACTGATCAATTCTTCTGCAAGAAATGTGGGAAAAGAGAGTGCACGTATTACCAGATGCAGACTCGCAGTGCTGATGAACCTATGACGGCCTATGTTACTTGTGTCGCATGCAATAACCGTTGGAAGTTCTGCTAG 969 0.4448 MEKELIRLYEAVKKAADVAAASSTNNSEVEENRCLDALKQLKKFPVDYQTLVSTQVGKHVRALTKHPRKNIRTFAMGVVEIWKAIVIKEINKNKKEKVEDEVQNRTDHSLLKIKVQDSRVRAEKTVSASTVKQDPEAAKKKTTIKSNDATRDRLREILQEAFSRVSGEVDDEDDEATVDRVKECDPIRVSAEVESALFQNWGCFKGPQKIRYRSLMFNLKDPKNPDFRRRVLLGEIEPERLVYMRTEDMASDERKKEIEKIKRKALFECERGQKLKATTDQFFCKKCGKRECTYYQMQTRSADEPMTAYVTCVACNNRWKFC 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci508g0001 322 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 322 - -
Prci508g0001 322 FunFam Probable Transcription elongation factor S-II 251 322 - -
Prci508g0001 322 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 3 96 IPR035441 -
Prci508g0001 322 ProSiteProfiles TFIIS central domain profile. 150 277 IPR003618 GO:0006351
Prci508g0001 322 SUPERFAMILY Elongation factor TFIIS domain 2 133 253 IPR036575 GO:0006351
Prci508g0001 322 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 102 IPR035441 -
Prci508g0001 322 Pfam Transcription factor S-II (TFIIS) 283 320 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci508g0001 322 NCBIfam transcription elongation factor S-II 13 322 IPR006289 GO:0003676|GO:0005634|GO:0006368
Prci508g0001 322 CDD Zn-ribbon_TFIIS 276 321 - -
Prci508g0001 322 ProSitePatterns Zinc finger TFIIS-type signature. 284 319 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci508g0001 322 SMART mid_6 152 260 IPR003618 GO:0006351
Prci508g0001 322 Gene3D - 251 322 - -
Prci508g0001 322 Gene3D - 122 250 IPR036575 GO:0006351
Prci508g0001 322 Pfam Transcription factor S-II (TFIIS), central domain 147 268 IPR003618 GO:0006351
Prci508g0001 322 SMART TFS2_5 8 88 IPR003617 GO:0005634
Prci508g0001 322 PIRSF TFIIS 1 322 IPR035100 -
Prci508g0001 322 CDD TFIIS_I 23 86 - -
Prci508g0001 322 Pfam TFIIS helical bundle-like domain 37 86 IPR017923 -
Prci508g0001 322 ProSiteProfiles TFIIS N-terminal domain profile. 10 89 IPR017923 -
Prci508g0001 322 ProSiteProfiles Zinc finger TFIIS-type profile. 280 320 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci508g0001 322 SMART Cys4_2 282 321 IPR001222 GO:0003676|GO:0006351|GO:0008270
Prci508g0001 322 SUPERFAMILY Zinc beta-ribbon 261 320 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Prci508g0001 TFIIS_M 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci508g0001 K03145 - qsa:O6P43_014856 327.405