Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci504g0001 ATGGAAGGTGCGGAGGAATTGGAGCTCGCGGGGCCGTCTAAAAGCCATGCCTCCGTTACGCACATCGCCAAGGGCAAGCGTACCAAGAGGCACAGGCCCTCCTCGCCCTGTGCTGTTGTCGCGGCCATGGCCTCTAGCTCATCAAGCGTCTCTGGCGAACACATCAGCGCCGGTGGAGATTACGGCTCCATCTCGTCCACCACGACCACTCATAATTATGATGAGAGCACCGAGGAAGAGGAAGACATGGCTAACTGCTTAATTCTCTTGGCCCAGAGCGGGGATTCTCATCATCTCAAGCACCGACCTCAATCTCAAGTCGCCAGAACCCATCCGGGAGGCAGCCGGAGATTCGTCGAGACGCCCACCGTCACTGCCGGTGCCGCTCAAGTCGGTTTGTTCGTGTACGAGTGCAAAACGTGTAACCGCAGCTTTCCTTCGTTTCAAGCGCTGGGCGGGCACAGGGCAAGCCACAAAAAGCCTAAGCTGACGTTAGAGGAGAAGAAACAGCCGCCGCCGCCGCCAATACCGCCGCAACTTATCAACAGTTATGGGATTGAAGAGGGTCGGATAAAAAGCAGCCCCCAGATTTCTCTTCAACTCGGCAGCAGCATGAACGGAGTCGCATCGATCAACAAGGCGAAGATTCACGAGTGCTCCATATGCGGGTCCGAATTCACGTCTGGGCAGGCACTGGGGGGCCACATGAGGAGGCACAGGGCATCCATGACCGCTGGCGCGCCCCAGGGGAGTCATGACATCGCTGCAGCTGAAGTGAAGCCAAGAGTGCTGGCGTTGGATCTAAACCTGCCGGCGCCGGAAGAGGATCAGCGGGATTCCAAGTTCGAGTGCAGAGCGAAAGAAAAACCACTGGTGCTGTCCGCTCCGTCTCTGGTGGACTGCCATTATTAG 912 0.5746 MEGAEELELAGPSKSHASVTHIAKGKRTKRHRPSSPCAVVAAMASSSSSVSGEHISAGGDYGSISSTTTTHNYDESTEEEEDMANCLILLAQSGDSHHLKHRPQSQVARTHPGGSRRFVETPTVTAGAAQVGLFVYECKTCNRSFPSFQALGGHRASHKKPKLTLEEKKQPPPPPIPPQLINSYGIEEGRIKSSPQISLQLGSSMNGVASINKAKIHECSICGSEFTSGQALGGHMRRHRASMTAGAPQGSHDIAAAEVKPRVLALDLNLPAPEEDQRDSKFECRAKEKPLVLSAPSLVDCHY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci504g0001 303 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Prci504g0001 303 SMART c2h2final6 217 239 IPR013087 -
Prci504g0001 303 SMART c2h2final6 136 158 IPR013087 -
Prci504g0001 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Prci504g0001 303 Gene3D Classic Zinc Finger 134 239 - -
Prci504g0001 303 PANTHER ZINC FINGER PROTEIN ZAT5 32 287 - -
Prci504g0001 303 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Prci504g0001 303 MobiDBLite consensus disorder prediction 1 34 - -
Prci504g0001 303 Pfam C2H2-type zinc finger 217 241 - -
Prci504g0001 303 Pfam C2H2-type zinc finger 135 161 - -
Prci504g0001 303 SUPERFAMILY beta-beta-alpha zinc fingers 135 239 IPR036236 -
Prci504g0001 303 MobiDBLite consensus disorder prediction 151 177 - -
Prci504g0001 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 244 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci504g0001 9 303 C2H2 Transcription Factor Family AT2G28200 42.508 1.67e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci504g0001 zf-C2H2_6 2e-11 CL0361