Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3234 ATGAGAGAGAATATGAGCTGGCGGAGAGTATTGAAGTCTGTGCAAGCTCTCGCTGCCCATACCCTTCTCTTGTGTTTCACTCTTCTTCTCGTCTTCAAGCTCGATCACGTTGTCTCCTGCTCTTGGTGGGTAATATTTTTTCCACTATGGATGTTTCATGCTGTTGTTGCTCGGGGAAGGTTCTCATTACCTGCGCCATCAGTTCCACGTAATCGGCATTGGGCACCATGCCATGCCGTTGTTGCAATACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCATGGTTTTGCAGCTGTCAATCTGAAGATTGTGTTCCTTCCATTGTTAACATTTGAAATCATTATTCTAATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGATGAGGCAATATGGGAGACACTTCCTCACTTTTGGGTTGCAATCTCAATGGTCTTCTTTGTTGCCGCTACAGTCTTCACACTCTTAAAACTGTGTGGTGATGTGGGTGCTCTTGGCTGGTGGGACTTGTTTATAAATTTTGGTATTGCCCAGTGCTTTTCCTTTCTTGTATGTACAAAGTGGTCGAATCCCATCATTCATAGAAATTCTCGCTCTAGAGAAGCCAGTGCATCTTCTAGTACGATTAGATATCTTGACTGGAATAGTGGCTTAATAGTTTCTTCAGAGGACAATCAACGTGAGGGGAGAATGTGTGGCCTACAAGACATAGGAGGTCACTTTATGAAAGTTCCAGTTATTGGATTCCAGATTCTTCTTTGTATGCGTTTAGAGGGAACACCTGCTAGTGCTAGACATATACCACTTCTAGTTCTCTTCTCTCCCCTTTTTGTACTGCAAGGTGCTGGGGTACTGTTTGCTGCATCTAAGTTGGTGGAGAAAATTATACTTCTGCTACGTAGTGGAGCTGGTGGAGGAATATATTTTATATTTTCTTCAAGAGCTCATGATTGCTTGGGGTTCTTGCATCATGGTTCAAGGTTATTGGGTTGGTGGTCCATTGATGAAGGGAGTCGAGAAGAACAAGCACGATTGTTCCAAGAGAGGACATCTGGGTATAACACTTTCAGTGGTTATCCTCCTGATGTTGTTAAGAAAATGCCTAAAAAGGATCTTGCTGAGGAGGTCTGGAGACTCCAGGCAGCTCTTGGGGAGCAAACAGAAATTACGAAATACAGTCAACAGGAGTTTGAAAGGCTTCAGAATGAGAAAGTTTTGTGCAGAATTTGTTTCGAGGGGGAGATTAACATCGTATTGCTACCTTGCAGGCACCGAATCCTCTGCAGCGCTTGCTCTGAGAAGTGTAAGAGGTGCCCAGTTTGCCGGGTCTCGATTGAGGAGTTATTACCTGTATATGATGTTTAG 1416 0.4315 MRENMSWRRVLKSVQALAAHTLLLCFTLLLVFKLDHVVSCSWWVIFFPLWMFHAVVARGRFSLPAPSVPRNRHWAPCHAVVAIPLLIAFELLLCIYLESLYVHGFAAVNLKIVFLPLLTFEIIILIDNFRMCRALMPGDEENMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLCGDVGALGWWDLFINFGIAQCFSFLVCTKWSNPIIHRNSRSREASASSSTIRYLDWNSGLIVSSEDNQREGRMCGLQDIGGHFMKVPVIGFQILLCMRLEGTPASARHIPLLVLFSPLFVLQGAGVLFAASKLVEKIILLLRSGAGGGIYFIFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLFQERTSGYNTFSGYPPDVVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEFERLQNEKVLCRICFEGEINIVLLPCRHRILCSACSEKCKRCPVCRVSIEELLPVYDV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3234 471 Pfam Transmembrane Fragile-X-F protein 33 296 IPR019396 -
Prci4g3234 471 FunFam Kinesin-like protein KIN-7D, mitochondrial 401 469 - -
Prci4g3234 471 Pfam Zinc finger, C3HC4 type (RING finger) 421 464 - -
Prci4g3234 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 469 IPR013083 -
Prci4g3234 471 SMART ring_2 424 458 IPR001841 -
Prci4g3234 471 SUPERFAMILY RING/U-box 415 466 - -
Prci4g3234 471 ProSiteProfiles Zinc finger RING-type profile. 424 459 IPR001841 -
Prci4g3234 471 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 5 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3234 Prci-Chr4 43365423 43381899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3234 5 471 C3H Transcription Factor Family AT1G73950 70.664 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3234 - - qsa:O6P43_023002 823.157