Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3223 ATGGCTGAACCTGAAGAGAAGTGTCATGCCTTGCTTGAGGAACGGAAGAAGAGGAAGAGGAAGAGGAATAGACCACTGAAATCTACAATTGAGGAGCAATTAGAACCTCAAGAGTCATGCCAGAATGGGGAGGAAGAAGGCGAAGAAGCCCGAGAGAATGATGGGGATAAGGAATCTGCTGAGCTGCATAAGAACAAGAAGGATAGAAAGGTGAAGCGCAGTGAAGAAGCAAGTGAAGGGGAAAAGGGCAGCGATGAGGACGGTGATGAGGAAGACAAAAAAAGGAAGTTAAAGAATGCTGGGTCTGGAATTATGAGCACTGTGTCGTTTGATTCTCTGGGATTGTCTGAACCTACTTTCAAGGCCATTAAAGATATGGGATTCGAGCATACAACTCAGATTCAAGCGAGAGCAATCCCGCCCCTTTTGATTGGGAAAGATGTTCTTGGTGCTGCGAGGACGGGTTCTGGAAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTTTTGTACCATGCTCAATTCAGTCCTCGAAATGGAACTGGTGTTGTTGTCATATGCCCTACTAGGGAGCTTGCAATACAGACACATGCTGTCGCAAAAGAACTTCTCAAGTATCATTCCCAGACACTTGCATTGGTTATCGGAGGTTCGGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGGGGTTAATCTCCTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAAGGATTTATATATAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATCAAAATCTTACCAAAGAATAGGCAAACAGCTTTGTTTTCGGCCACCCAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATCTATGTTGATGTGGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCAGCAGGGCTACGTTCTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTCTATTCCTTCTTGAAGAGATATCACTTGAAAAAAAAGATGATGGTCTTTTTCTCTTCATGCAACTCTGTGAAGTTTCATGCGGACCTTCTCAATTACATACAGATTGATTGCTTTAATATACATGGAAAACAAAAGCAACAGACACGTACAACAACTTTCTTTAACTTCTGCAAAGCAGAAAAGGGAATTTTGCTCTGTACTGATGTTGCTGCCCGTGGACTCGATATACCTGATGTGGACTGGATCGTGCAGTATGATCCTCCTGATGAACCCAAGGAATATATCCATAGGGTTGGTCGAACAGCTCGTGGGGAAGGCGGCAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTAAAGGCAGCGAAGGTTCCCGTGAAAGAATATCTTTTTGATGAAAAGAAGCTGGCGAATGTACAGTCTCACCTGGAGAAGTTGGTGGGTAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCATATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGGCTTGATTTACAGGCTGTGGCAGCTTCATTCTGTTTTTCAAATCCACCAAAGGTTAGTTTAGGCATAGACAGCGGTGCTTCGAAGCATAGGAAGAAATTGCGCAAGATTGAAGGAAGCAGACATGGATTCAGCGACAGCAATCCTTATGGTAAAAAAATTGCTGCAGATGATAACCGCCAATTTGTGAGGCATTAG 1794 0.427 MAEPEEKCHALLEERKKRKRKRNRPLKSTIEEQLEPQESCQNGEEEGEEARENDGDKESAELHKNKKDRKVKRSEEASEGEKGSDEDGDEEDKKRKLKNAGSGIMSTVSFDSLGLSEPTFKAIKDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYHAQFSPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCAKRFVVLYSFLKRYHLKKKMMVFFSSCNSVKFHADLLNYIQIDCFNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYLFDEKKLANVQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVSLGIDSGASKHRKKLRKIEGSRHGFSDSNPYGKKIAADDNRQFVRH 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3223 597 Pfam DEAD/DEAH box helicase 132 303 IPR011545 GO:0003676|GO:0005524
Prci4g3223 597 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 260 268 IPR000629 -
Prci4g3223 597 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 108 136 IPR014014 GO:0003724
Prci4g3223 597 SMART helicmild6 369 450 IPR001650 -
Prci4g3223 597 Pfam Domain of unknown function (DUF4217) 491 551 IPR025313 -
Prci4g3223 597 MobiDBLite consensus disorder prediction 1 98 - -
Prci4g3223 597 CDD DEADc_DDX18 119 316 IPR044773 GO:0003724|GO:0005524
Prci4g3223 597 MobiDBLite consensus disorder prediction 38 52 - -
Prci4g3223 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 315 IPR027417 -
Prci4g3223 597 Gene3D - 325 553 IPR027417 -
Prci4g3223 597 SMART ultradead3 127 332 IPR014001 -
Prci4g3223 597 MobiDBLite consensus disorder prediction 566 585 - -
Prci4g3223 597 Gene3D - 14 318 IPR027417 -
Prci4g3223 597 FunFam RNA helicase 325 556 - -
Prci4g3223 597 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 499 IPR001650 -
Prci4g3223 597 PANTHER RNA HELICASE 64 494 - -
Prci4g3223 597 CDD SF2_C_DEAD 329 460 - -
Prci4g3223 597 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 314 IPR014001 -
Prci4g3223 597 Pfam Helicase conserved C-terminal domain 344 449 IPR001650 -
Prci4g3223 597 MobiDBLite consensus disorder prediction 53 80 - -
Prci4g3223 597 SMART DUF4217_3 490 553 IPR025313 -
Prci4g3223 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 464 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3223 Prci-Chr4 43203949 43210327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3223 109 468 Eukaryotic Initiation Factors Gene Family AT3G13920 30.748 3.30e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3223 K13179 - zju:107418893 895.575