Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3218 ATGCTAAATAAACAAACCCTTGCTCCTACTCTCATGGAAAACCTAGAGACCTCATCAGAATGTCCACTTTCTTCTCAAAACTCAAACAAAACCCAATCTTGTGATAAGCCCTATGTGACCACAGAGAGCAGGATAATAAAGGTTCCAAAAAGAGCAGACATGAGAGTGAGTGAAAGAAAGTACCTAGGGGTGAGACAAAGGCCTTCAGGAAGGTGGGTCGCTGAGATCAAGGACTCCTCACAGAAGTTGAGGCTTTGGCTGGGAACTTTTGACAGAGCAGAAGATGCTGCTGTGGCTTATGATTGTGCTGCAAGGCTTCTAAGAGGAAGAAATGCCAAGACAAACTTCCAGAGCGCTTCAGGGATGATCACCAACACACACGAGGAAAATTACAGCTTTTTGCTTAAGAATCCAAGGGCTTACCAGATTCTCAAGCATGCAATCATGAAAAACCATCATGCAGTTCTTTCTTCCACAAGCATGCCTTGGAAGAACCAGATCAGTGATATTACGAGAGACGGATTCGACACGCTTGTTGAAGAAACCTTAGTTTGCTGTTCCAATAGCTCTGAAGAAGGTTCTTCTTCTTCTTCTGCGTGCTGTGGGGTCTCGTTTGGGAGTTCTAAGGTTTATTCTTCTGTTGTTGTGGCTCCTTCTTTCAGCGCCTCATTTTGTCAGACAGATGACGGTCATGAAGAAACCCCATGA 708 0.4449 MLNKQTLAPTLMENLETSSECPLSSQNSNKTQSCDKPYVTTESRIIKVPKRADMRVSERKYLGVRQRPSGRWVAEIKDSSQKLRLWLGTFDRAEDAAVAYDCAARLLRGRNAKTNFQSASGMITNTHEENYSFLLKNPRAYQILKHAIMKNHHAVLSSTSMPWKNQISDITRDGFDTLVEETLVCCSNSSEEGSSSSSACCGVSFGSSKVYSSVVVAPSFSASFCQTDDGHEETP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3218 235 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Prci4g3218 235 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Prci4g3218 235 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Prci4g3218 235 Pfam AP2 domain 60 109 IPR001471 GO:0003700|GO:0006355
Prci4g3218 235 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 141 - -
Prci4g3218 235 MobiDBLite consensus disorder prediction 16 36 - -
Prci4g3218 235 FunFam ethylene-responsive transcription factor RAP2-11 59 118 - -
Prci4g3218 235 CDD AP2 60 117 IPR001471 GO:0003700|GO:0006355
Prci4g3218 235 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Prci4g3218 235 SUPERFAMILY DNA-binding domain 60 117 IPR016177 GO:0003677
Prci4g3218 235 Gene3D AP2/ERF domain 59 118 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3218 Prci-Chr4 43173693 43174903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3218 60 116 AP2-EREBP Transcription Factor Family AT5G19790 71.930 3.66e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci4g3218 AP2 4.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3218 K09286 - gmx:100800716 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g3218 4 43173693 43174903 Prci4g3218 4 43173693 43174903 ECH