Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3189 ATGGCAGATGTCACCTACCTCCGCCACCGCGAACCCGACGACGACCCTCACCTTCCTGAGCAGACCCTAACTCTTGATTCTATCCCCTACCGGTCTCACTCCGATTTTGATTTCGATTTCGACTTCTATCCTTCCGATCCAGAATTCACTCCGGCCGATCCGCCCCCTCGCCCTCACAACGCCTCTCGCGATCGTGGATTGTCTCATCGATTTGAATCCGCCATCTCTGTACGAGGTGACGATAACTTCTCGGACCCTGGTTCGATTCCCATCACCGATCTGTTGGACCGCGAAAATCAGGTAAATTTCGTTATGGATCTGATTCAGCAGCGTGTTGAGCAATCGCAGGTCATGGTTCACGGTGATTTGGTCTCCGAAGTGCTGGATGATTCTAATTTTGGTATTATTGACGGTCATTGCGACGTGGGTGTTGATGCTTTGCGTATGGATTTCGAATTGGGATTAGGGTTTGGCGTGGACAGGGATTCTTTGCAGGGTGATGACAGTAGTGGTTTTATGGTTGAAAATTATGGTTCTGCTGGTAGTGGTGGGGATGGTGACCACTTTTTCGTTGGAAGGAGGGTGTCTGGATCTGAGTCCGTGGGAACGCCGTCTACGGCAAGCCGAATTCGGCCTTTCGACAACTGTGTACGGCTCGTAGGGTTCGGGTCAGATTCTGATGAGGAGGAGAATGGGGTTTTGGGTCCGCTCCCGCATTCTGAAGATGAATATAATGTGCACGACGAGAACGACGATGTTGCCAGCATCCCTCTTTGCTGGGATTCATTTCAATTGGAGGATAACAGGGAGAATACCGAAGATTTTGAGTGGGAAGAAGTTGATGGTCGGGTCGATGAGAGGGATATTTTGAGCATGCTCACTGGCGAGGATGATGCGTCTGTATCAGTTTCCGTTTCTATAAATGGACTTGAAGAAGTAAGTGTTATGAGAGCGGGAGGTGTGGAAAATTTGGGTTGGGAAGTTTTGCTGAATGCCAATAATTTGGACACGAACCCTGATTTGGATCACGATGCAGAACCTTATTTTGGTGATCATGATGACTATATTTATACTGCTGAGTACGAGATGATGTTTGGCCAATTCGCTGACAATGAGAATCCCTTGGTTAGTCGGCCTCCAGCTTCCGTATCAGTTGTTCAGAATCTTCCATCGGTGATTGTGACCAAACAAGATATCGAGGACAATGGTGCACTTTGTGCAGTTTGCAAGGATGAGTTCAGTGTTGAAGAACAAGCGAAACAGTTGCCATGTTCACATTACTACCACGGAGAATGCATTATTCCATGGCTGGGAATTCGGAACACGTGCCCTGTTTGTAGATACGAGTTGCCTACTGATGATGCTGATTATGAGCGTAGGAGGATGCAAAGATCTGGCGGTATTTTATGA 1410 0.4794 MADVTYLRHREPDDDPHLPEQTLTLDSIPYRSHSDFDFDFDFYPSDPEFTPADPPPRPHNASRDRGLSHRFESAISVRGDDNFSDPGSIPITDLLDRENQVNFVMDLIQQRVEQSQVMVHGDLVSEVLDDSNFGIIDGHCDVGVDALRMDFELGLGFGVDRDSLQGDDSSGFMVENYGSAGSGGDGDHFFVGRRVSGSESVGTPSTASRIRPFDNCVRLVGFGSDSDEEENGVLGPLPHSEDEYNVHDENDDVASIPLCWDSFQLEDNRENTEDFEWEEVDGRVDERDILSMLTGEDDASVSVSVSXINGLEEVSVMRAGGVENLGWEVLLNANNLDTNPDLDHDAEPYFGDHDDYIYTAEYEMMFGQFADNENPLVSRPPASVSVVQNLPSVIVTKQDIEDNGALCAVCKDEFSVEEQAKQLPCSHYYHGECIIPWLGIRNTCPVCRYELPTDDADYERRRMQRSGGIL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3189 470 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 288 452 - -
Prci4g3189 470 MobiDBLite consensus disorder prediction 1 20 - -
Prci4g3189 470 SUPERFAMILY RING/U-box 387 454 - -
Prci4g3189 470 Pfam Ring finger domain 407 448 IPR001841 -
Prci4g3189 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 454 IPR013083 -
Prci4g3189 470 SMART ring_2 407 447 IPR001841 -
Prci4g3189 470 MobiDBLite consensus disorder prediction 39 68 - -
Prci4g3189 470 MobiDBLite consensus disorder prediction 1 23 - -
Prci4g3189 470 FunFam E3 ubiquitin-protein ligase RING1-like 368 454 - -
Prci4g3189 470 ProSiteProfiles Zinc finger RING-type profile. 407 448 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3189 Prci-Chr4 43023732 43025470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3189 254 454 C3H Transcription Factor Family AT5G60820 47.887 1.68e-57 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3189 - - pcin:129307991 958.747