Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3188 ATGAAAATACGTTCGGTGAAGCTGAGGGAAGCCCACCAGGCCGCTAGCAACGGCCGCCCCTCTTCCTGCTCCGTCTTGTGGGACCAGCAAGCTCAACACCTTGTCACTGCATGCTCTTCTGACGTCTCCATTTCAATCCACGACCCTCTGCTTCTTTCATCTGCTCCGAAGGTTCTCACTCACCACCGCGACGGCGTCACCGCTTTGGCTCTTAGCCCCAACTCTACGTGTCTTGCATCCGGATCCGTCGATCACTCCGTGAAGCTCTACAAGTTCCCGGGTGGAGAGTTCCAGACTAATATTACCAGGTTTACACTTCCAATACGCTCACTTGCATTTAATAAATCAGGGAGTTTGTTAGCAGCAGCTGGTGATGACGAGGGCATTAAACTTATCAACACAGTTGACGGTTCTATAGCTCGGGTTGTCAAAGGTCATAAAGGGACTGTCACGGGTTTAGCTTTTGACCCCAATGGTGAATACTTGGCATCTGTAGATTCATCTGGAACTGTTATTTATTGGGAACTTCACTCAGGAAGAATAGTTCATAACCTCAAAGGCATTGCTCCTGATACTAGAGCAGATGTATCTGCTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTGGCTGTTCCGGGGTTAAAAAATGATGTCGTGATGTATGATAGAGATACTGCTGAAAAATTGTTTACATTGAAGGGCGATCATACACAACCCATATGTTTCTTGTCTTGGTCACCCAATGGCAAGTACATGGCTACTTCTAGCTCAGATAGGCAGATTCTAATCTGGGATGTCAATAGAAAGCAGGATATTGATAGGCAAAAATTCAATGAAAGAATATGTTGCATGGCTTGGAAGCCAATAGGTAATGCGATAGCTATTATTGATGTTATGGGGAAGTTTGGTATCTGGGATTCTGTTATTCCTTCATCCATGAAATCCCCAACAGAGGACATTCCCACGCAATCCAAGAATAGTAATGGGCTTCTTTTGTTTGATGAGGAGGATCCGGACCTTTGTGAAAGTGGAAGTGTAAGCGATCTTGGTGAAGATAGTGATGGAGAGTCTGAACTACCTAGCAGGAAAAGATTACGTGAACAGCCTTCGAGTAAGGAAAACTTTGATGAGGATGGCAGTGACGAAATTGCTTTGCATCCAAAGGTTGAATCTCGTAAAAAACCAAATCACACGCATAAAGAAGATTTAAACACTGCGAATGTGGGACTTAAAAGCTCAATTATAACGTGTAAACCAAAGATGCAAGAAGCATTTCAACCAGGATCTACTCCTGCACAGCTTGGGAAGAGGCGCTTTTTGTGCTACACTATGCTTGGAAGTATAACCACAATTGAACATGATGGGTACTTCCACATAGAGATTGATTTTCATGATACTGGCAGCAGTCCGCGAGTTCCGTCAATGATGGACCATTTTGGATTTACAATGGCTGCTTTGAATGAGAATGGGAGTGTCTTTGCGAATCCTTGCAAGGGGGAGAAGAACATGAGCACTCTCATGTATCGTCCATTTAGCAGTTGGGCAAGTAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTAAAAGTTGTTGCACTTGGTACTGCTTGGGTGGCTGCAGCAACTAGTTTTAACTATCTTCGTATATTTACAGATGGTGGTTTGCAGAGAAATATTATTTCGCTGGATGGGCCAGTGGTGACTGCCTCAGGTTTCAAGGACAAATTGGCAGTTGTTACTCATGCCTCTGATTGTTTTTCCTTAAATAATCAGGTGCTAGAGTTTAGAGTGTTTAATATACCGGATGAAACCCAGCTCCTTAAAGGCCGCCTACCATTGACTCCTGGTTCATCTTTAACATGGTTTGGATTTAGTGAAGAAGGCCAATTAAGTTCCTATGATTCCAAGGTGATGCCTAAACCGGTTCTTACTCTATTGAATCTTTCGTTTCCTCTTGCTTCCTCTGATCTGGGATCGGAAGCCCTTGAGAATGAATTCATAATGAACAACATGCATCTCTTTGAGATTCAGAAAAGAATGGATGAAATGGCAGTTGCTGGTTTGGATGCCGGTTCGCTTGACGATGAGGCTTTCAATCTAGAAGCCGCCCAAGATAGATGTATACTTAGGCTTATAGCATCCTGCTGTAATGGAGATAAACTTGTGAGAGCCACTGAACTCGTGAAACTTTTGTCACTGGAGAAATCAATGAAAGGTGCAATTAAACTTGTCACTGCTCTAAAACTTCCTAACTTGGCGGAGAGGTTCAGCAGCATATTAGAGCAAAGGCTTCTACATGAAATGAAAAAGCCCGCAGATAGCAACCACCACCAAGATGACCGTACCGCACCATTGACAGTCGATGTTTCAAATAGCAGAAGCAAAGTCCTGGCTCAGACGGAAGCAGCAGCCACAGTGAGCAATTCGTCATCACCAAAATTATCTGCTCCTTTGTTGACAAAGAAAGCCAAGTCACCAGGGGAAGCCAAAGCGGGAATAGATAAGCCTGTGGTGGCGAATGAAACTGTGAAGGGGAAGAATGCAGGGAATGATACAAATGATAGGGAAGGGAAGGCGGGGGAAATACGTCGCGTCTCAGCTCACCATTCTCAAGATATCTCTGTAAAGTCCTCAAATAAGCAGGAAGTAGACAAGTTAGACGCTGGCATGGCACAACCAAGTCGCCCCTCCAATCCGTTTTTGAAGTCGTCCATCAAGTAG 2730 0.444 MKIRSVKLREAHQAASNGRPSSCSVLWDQQAQHLVTACSSDVSISIHDPLLLSSAPKVLTHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFQTNITRFTLPIRSLAFNKSGSLLAAAGDDEGIKLINTVDGSIARVVKGHKGTVTGLAFDPNGEYLASVDSSGTVIYWELHSGRIVHNLKGIAPDTRADVSAMNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKLFTLKGDHTQPICFLSWSPNGKYMATSSSDRQILIWDVNRKQDIDRQKFNERICCMAWKPIGNAIAIIDVMGKFGIWDSVIPSSMKSPTEDIPTQSKNSNGLLLFDEEDPDLCESGSVSDLGEDSDGESELPSRKRLREQPSSKENFDEDGSDEIALHPKVESRKKPNHTHKEDLNTANVGLKSSIITCKPKMQEAFQPGSTPAQLGKRRFLCYTMLGSITTIEHDGYFHIEIDFHDTGSSPRVPSMMDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSSWASNSEWSMRFEGEEVKVVALGTAWVAAATSFNYLRIFTDGGLQRNIISLDGPVVTASGFKDKLAVVTHASDCFSLNNQVLEFRVFNIPDETQLLKGRLPLTPGSSLTWFGFSEEGQLSSYDSKVMPKPVLTLLNLSFPLASSDLGSEALENEFIMNNMHLFEIQKRMDEMAVAGLDAGSLDDEAFNLEAAQDRCILRLIASCCNGDKLVRATELVKLLSLEKSMKGAIKLVTALKLPNLAERFSSILEQRLLHEMKKPADSNHHQDDRTAPLTVDVSNSRSKVLAQTEAAATVSNSSSPKLSAPLLTKKAKSPGEAKAGIDKPVVANETVKGKNAGNDTNDREGKAGEIRRVSAHHSQDISVKSSNKQEVDKLDAGMAQPSRPSNPFLKSSIK 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3188 909 MobiDBLite consensus disorder prediction 851 873 - -
Prci4g3188 909 MobiDBLite consensus disorder prediction 787 819 - -
Prci4g3188 909 CDD WD40 23 296 - -
Prci4g3188 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Prci4g3188 909 SMART WD40_4 136 175 IPR001680 GO:0005515
Prci4g3188 909 SMART WD40_4 94 133 IPR001680 GO:0005515
Prci4g3188 909 SMART WD40_4 227 267 IPR001680 GO:0005515
Prci4g3188 909 SMART WD40_4 2 48 IPR001680 GO:0005515
Prci4g3188 909 SMART WD40_4 52 91 IPR001680 GO:0005515
Prci4g3188 909 SMART WD40_4 178 224 IPR001680 GO:0005515
Prci4g3188 909 SMART WD40_4 270 308 IPR001680 GO:0005515
Prci4g3188 909 MobiDBLite consensus disorder prediction 1 20 - -
Prci4g3188 909 Pfam Minichromosome loss protein, Mcl1, middle region 426 639 IPR022100 -
Prci4g3188 909 Gene3D - 2 195 IPR015943 GO:0005515
Prci4g3188 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Prci4g3188 909 MobiDBLite consensus disorder prediction 773 909 - -
Prci4g3188 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Prci4g3188 909 MobiDBLite consensus disorder prediction 344 407 - -
Prci4g3188 909 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Prci4g3188 909 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 639 - -
Prci4g3188 909 SUPERFAMILY WD40 repeat-like 26 308 IPR036322 GO:0005515
Prci4g3188 909 MobiDBLite consensus disorder prediction 357 403 - -
Prci4g3188 909 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Prci4g3188 909 Pfam Anaphase-promoting complex subunit 4 WD40 domain 202 289 IPR024977 -
Prci4g3188 909 Gene3D - 196 309 IPR015943 GO:0005515
Prci4g3188 909 FunFam Transducin family protein / WD-40 repeat family protein 196 323 - -
Prci4g3188 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Prci4g3188 909 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Prci4g3188 909 Pfam WD domain, G-beta repeat 141 174 IPR001680 GO:0005515
Prci4g3188 909 Pfam WD domain, G-beta repeat 57 90 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3188 Prci-Chr4 43018154 43023099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3188 52 270 U-box Gene Family AT2G33340 24.664 2.72e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3188 K11274 - qsu:112010612 1313.9