Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3165 ATGGGGCGGGGCAGAGTGGAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTCACCTTCAGCAAGAGAAGGTCCGGCCTCCTCAAGAAAGCCCGAGAGATCTCTGTCCTCTGCGATGCCGACGTCGCTCTCATCGTCTTCTCCGCCAAAGGCAAGCCCTTCCATTACTCCAGCGACCCCTGTATGGAGAGAATTTTGGAACGGTACGAGAGGCATTCCTACGCAGAGAGGCAGATTGCTGCAAACGATCAGGAAACCAATTGTCAGGAAAACTGGACTTTACAGCACGCGAAGTTGAAGGCAAGGATAGAGGTCCTGCAAAGGAATCAAAGGCATTTTATGGGAGAAGATCTGGAGGGCTTGAGTCTGAAAGAGCTTCAGAATTTGGAGCATCAGCTGGAGTCAGCTCTTAAACACATAAGATCACGAACGAACCGGCTCATGAACGAATCTGTTTCAGAGCTTCAGAAAAAGGATAAGGCACTGCAGGAACAAAACAACCTGCTGGCTAAGAAGATAAAGGAAAGAGAGAAGGCAGTTGAGCAGAAGCAGAATCAAGGATTGGATAATTCCTCTGTTCTGTTGACACAACACCCACTGCTGCCTTTGAATATTATCGGCGGGGGATCGACAGGAGGAGCAAGAGGTGAGGGTGTAGATTATGGAGCCAATAACACACTTCTTCCTTGGATGCTTCGCCCCCTCTAA 711 0.4937 MGRGRVELKRIENKINRQVTFSKRRSGLLKKAREISVLCDADVALIVFSAKGKPFHYSSDPCMERILERYERHSYAERQIAANDQETNCQENWTLQHAKLKARIEVLQRNQRHFMGEDLEGLSLKELQNLEHQLESALKHIRSRTNRLMNESVSELQKKDKALQEQNNLLAKKIKEREKAVEQKQNQGLDNSSVLLTQHPLLPLNIIGGGSTGGARGEGVDYGANNTLLPWMLRPL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3165 236 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Prci4g3165 236 Pfam K-box region 85 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci4g3165 236 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci4g3165 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci4g3165 236 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Prci4g3165 236 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Prci4g3165 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci4g3165 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci4g3165 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci4g3165 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci4g3165 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Prci4g3165 236 Coils Coil 90 110 - -
Prci4g3165 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci4g3165 236 Coils Coil 124 187 - -
Prci4g3165 236 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3165 Prci-Chr4 42868738 42872456 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3165 1 187 MADS-box Gene Family AT1G26310 69.519 1.09e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci4g3165 K-box 4.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3165 K09264 - gmx:100784742 314.309