Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3164 ATGGGGCGGGGCAGAGTGGAGCTGAAGAGGATAGAGAACAAGATCAACAGGCAGGTCACCTTCAGCAAGAGAAGGTCCGGCCTCCTCAAGAAAGCCCGAGAGATCTCTGTCCTCTGCGATGCCGACGTCGCTCTCATCGTCTTCTCCGCCAAAGGCAAGCCCTTCCATTACTCCAGCGACCCCTGTATGGAGAGAATTTTGGAACGGTACGAGAGGCATTCCTACGCAGAGAGGCAGATTGCTGCAAACGATCAGGAAACCAATTGTCAGGAAAACTGGACTTTACAGCACGCGAAGTTGAAGGCAAGGATAGAGGTCCTGCAAAGGAATCAAAGGCATTTTATGGGAGAAGATCTGGAGGGCTTGAGTCTGAAAGAGCTTCAGAATTTGGAGCATCAGCTGGAGTCAGCTCTTAAACACATAAGATCACGAACGAACCGGCTCATGAACGAATCTGTTTCAGAGCTTCAGAAAAAGGATAAGGCACTGCAGGAACAAAACAACCTGCTGGCTAAGAAGGGGATCGACAGGAGGAGCAAGAGGTGA 546 0.5055 MGRGRVELKRIENKINRQVTFSKRRSGLLKKAREISVLCDADVALIVFSAKGKPFHYSSDPCMERILERYERHSYAERQIAANDQETNCQENWTLQHAKLKARIEVLQRNQRHFMGEDLEGLSLKELQNLEHQLESALKHIRSRTNRLMNESVSELQKKDKALQEQNNLLAKKGIDRRSKR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3164 181 Coils Coil 124 173 - -
Prci4g3164 181 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Prci4g3164 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci4g3164 181 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Prci4g3164 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci4g3164 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci4g3164 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci4g3164 181 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Prci4g3164 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Prci4g3164 181 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Prci4g3164 181 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci4g3164 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci4g3164 181 Coils Coil 90 110 - -
Prci4g3164 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci4g3164 181 ProSiteProfiles K-box domain profile. 90 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3164 Prci-Chr4 42868728 42872456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3164 1 177 MADS-box Gene Family AT1G26310 69.492 1.11e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci4g3164 K-box 4.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3164 K09264 - gmx:100816836 284.648