Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3162 ATGGAGTCTTGGAGATACAGTTCTGAAGAACAGGGTTTTGTGCCCAATAATACACTTCCACCTTCCAATACACCTGCGAGAAGTAAAAATTCCTTCCTGGGTTGGGGATTCAAAACTCAACCTAGTTTTTCCGGCAACGTTTTGGCCCCAGCTCAACAACATTTCGAGAGTCAAGATTGTGAGGAATTGGGATTTCCAGAAATGTTGGGGAAACAGTTGTTAAATGATCCGCTTGGCTGTATTATGAATGATCCGAATTCATTTTCTGGAGGTGAAGACTCTGCTTCAAAGCTTTCAAACTCTGTGGTTGATTCTAATGGCCGGGATTCCCTCGTTGATTTGAAGTTGGGACGAGTTGGTGATCAAAGAAATGTCATTGAATCGCCATTTCCCAAAGGTATTCCCTTTTTGTGTTCATCAGAGTCATCTACGACCCCCAGGAGAGTGAGAACTTCAGGGGTTCAGTCACAGACTGCTTACTGCCAAGTGTATGGCTGCAACAAGGATCTAAGCGCCTCTAAAGACTACCACAAGAGGCATAAAGTTTGTGAGGTTCACTCCAAGACTGCTAAAGTCATAGTGAAGGGCATAGAGCAGAGGTTTTGTCAACAATGTAGCAGGTTTCATTTGCTGGCTGAATTTGATGATGTTAAGCGCAGCTGTCGCAAACGCCTTGCAGGCCACAATGAGCGTCGTAGAAAGCCACAAATGGGTACTCACTCTGGAAAGGGAAGGAAGTTAATTCCGTCGTATAATGATAGCAGATTCCAGGGTAGCATGCTAACAAGAGCATCTTTTATCTGTCAAAAGATACTTCCTAGTGGTGTTTTGCATTCTGAGAAGTATGGCACTGATAACTGGCGGAAACCTATAAGGGTCCAAGGTGGCAGTGATTTTAGACATATCTCTGCTACTCCTATCACAAATGGGCGTTCTCAATCAAGATCTCTGCTTCCTTCATATGCTGAAAAGCAATATCAGCTCCTGAATGAAACTGGTGCTCTGCCCACTACAGGAAGCATATTCTGTGAGAACAGTAGTCAGTATCCGCTTGCTCTTGGACATAGTTATTCTGGGCCACGATCACCATACCAAGACACCATCTTAGGAAGTAATGACTTTAATGTTTTTGATACAGCATCAACCATTCAGGGATTATCGGGACTTACAGGCTCGGGTTGTGCTCTCTCTCTTCTGTCATCTCAATTCCAGAACTCATCAAGCCATTCATCAGCAATGCCCATGGGTCGCCCCAGCCACTACAGCTTGAGTCATGCCTCTGAAAAGGTCATGGGAATAAGCTCCCAGGCTTCTACAGGTGGGGTGTCAGCGTCAGGTAGTTTTCCTTCAGAAACAAATCATTTTGATGGAGGTCGTCTTGGCCCTGTGTTGATATTAGACAATAATGAAATGGTGGACATAGAAATCGCAGATGGTATTTTTCAAGGGTTAGATGCTGTGAATATGAAAGCCCGTCATGATGGCCCCACTATTAACTTGCTTCAACTGTCATCACAGCTTCACCGAGTTGATCATCAACGCCAATCCTTGCAGGTGAAGCAAGAAAATGATTCTTTTTGCTCCCTCCGGATTACTTAG 1599 0.444 MESWRYSSEEQGFVPNNTLPPSNTPARSKNSFLGWGFKTQPSFSGNVLAPAQQHFESQDCEELGFPEMLGKQLLNDPLGCIMNDPNSFSGGEDSASKLSNSVVDSNGRDSLVDLKLGRVGDQRNVIESPFPKGIPFLCSSESSTTPRRVRTSGVQSQTAYCQVYGCNKDLSASKDYHKRHKVCEVHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDDVKRSCRKRLAGHNERRRKPQMGTHSGKGRKLIPSYNDSRFQGSMLTRASFICQKILPSGVLHSEKYGTDNWRKPIRVQGGSDFRHISATPITNGRSQSRSLLPSYAEKQYQLLNETGALPTTGSIFCENSSQYPLALGHSYSGPRSPYQDTILGSNDFNVFDTASTIQGLSGLTGSGCALSLLSSQFQNSSSHSSAMPMGRPSHYSLSHASEKVMGISSQASTGGVSASGSFPSETNHFDGGRLGPVLILDNNEMVDIEIADGIFQGLDAVNMKARHDGPTINLLQLSSQLHRVDHQRQSLQVKQENDSFCSLRIT 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3162 532 Pfam SBP domain 161 234 IPR004333 GO:0003677
Prci4g3162 532 MobiDBLite consensus disorder prediction 225 249 - -
Prci4g3162 532 Gene3D - 151 222 IPR036893 GO:0003677|GO:0005634
Prci4g3162 532 MobiDBLite consensus disorder prediction 1 27 - -
Prci4g3162 532 SUPERFAMILY SBT domain 159 239 IPR036893 GO:0003677|GO:0005634
Prci4g3162 532 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Prci4g3162 532 FunFam Squamosa promoter-binding-like protein 14 152 222 - -
Prci4g3162 532 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 518 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3162 Prci-Chr4 42838853 42844028 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3162 147 278 SBP-box Gene Family AT1G69170 57.576 2.35e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci4g3162 SBP 4.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3162 - - gmx:100777766 608.216