Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3137 ATGTCAAAGTCAGTGACTCCGGATGCGATTTCGATCCTCTTTGCGAATCCCTCCCCGGATTCTTCATTGGAGCTTCCCGAGATCGTCGTCCAAGTCCTGGATCTCAAGCAAAGCGGTAACAGATATATGTTTACTGCAAGCGATGGGAAATTGAAGTTAAGAGCAATTCTACCCTCAAGTCAGAACTCGCAGGTCCTCTCAGGAAATATTCAGAACCTGGGTCTTATTCGCATCACTGACTACACTCTCAACGACATCCCAAACAAGTCAGAGAAATATCTTATTGTGACAAAATGTGAACCGGTCTCCCCTGCACTTGAAACGGAAATAAAGCATGAGGTAGAGAGGGAGGAAACCGGCATTATTTTGAAACGACAGCAAGAGGACAAAATGAAAAGTCAGATTAAAACTGAAGGAGCAGGCCTTCTTTTGAAACCAAAGCAAGACATCGTGGTCAAATCTGCTGCTCAGATCGTACATGAACAACATGGAAATATGGTTCCTGCAGCTCGAATGGCCATGACTCGTAGGGTGCGTCCTCTGGTTTCCTTAAACCCTTATCTGGATAACTGGACAATAAAAGTTCGGGTTACAAACAAAGGAATCATGCGCACGTATAAGAATGCAAGAGGGGAAGGTTGTGTCTTCAACGTGGAACTGACAGATGAAGATGGCACTCAAATTCGAGCTACAATGTTTAATGTGGCTGCAAGGAAGTTCTATGAAAAGTTTGTATTGGGGAAGGTTTACTATATTTCAAAGGGTACTTTAAAAGTTGCAAACAAGCAGTTCAAAACCGTTCAAAATGATTACGAAATGACACTAAACGAGAACTCTGAAGTGGAAGAGGCAACCAATGAAGAAAGCTTCGTTCCAGAAACTAGGTTCAAGTTTGTCCCGATTGATCAGCTGGGTCAGTATGTCAACCGAAATGAACTTGTTGATGTCATTGGAGTTGTTCAAAATGTGTCCCCTACAATGAGCATACGCCGGAAGAGCAACAATGAAACTGTCCCGAAGCGTGATATTACTATTGCTGATGAGACAAAGAAAACAGTTATCGTGTCTTTGTGGAATGAGAATGCGATTAATGTAGGGCAAGAATTGTCGGATCTTGCTGGTAATTCTCCTTTAGTGGCAATCAAATCGCTCAAGGTTGGGGACTTTCAAGGTGTTTCCTTGTCGACTATAGGTAGAAGTCTAGTGCTGGCAAATCCAGACATACCTGAAGCAAAGAAGCTTAGAAGCTGGTACGAATCTGAAGGTAAAGATGCATCATTGGCATCCATGAGCTCTGGAACGAGTTCAGTATCCTCGAACGGAATGAGATCGGTGTTTTCAGACCGTGTCTCACTTTTTCATATTACCTCAAGACCGTCCTTAGGGGAGGACAAGCCTGCATTTTTCAGTGTCAGGGCACATATAAGCCATATCAAGCCTGACCAGACAATGTGGTACCGGGCTTGCAAAACTTGCAACAAGAAAGTCACCGAAACCATTGGTGCAGGGTATTGGTGTGAAAGATGCCAGAAAAATTATGAAGAGTGCAGTTTAAGATACATTATGGTTGTAAAAGTTGCTGATAGAAGTGGTGAAGCCTTTATATCAGTCTTCAACGAAGAAGCTGAGAAGATTGTTGGGTGCCCTGCTGAAGAACTAGATAGCCTGAAGTCACAGGAGGGGGAAGATAGTCTATATCAGTTGAAACTGAAACAAGCAACATGGACTCCTTATCTTTTCTGGGTCAGTGTTTCTCAGAATGAGTATAATAACGAGAAAAGGCAGAGGATAACAGCCCGGGCAGTTGTTCCGATGGACTTTGCTGCCGAATCAAGATTTCTCTTGGAAGAGATATCAAAGATGAAATTTTCTCAATAA 1878 0.4292 MSKSVTPDAISILFANPSPDSSLELPEIVVQVLDLKQSGNRYMFTASDGKLKLRAILPSSQNSQVLSGNIQNLGLIRITDYTLNDIPNKSEKYLIVTKCEPVSPALETEIKHEVEREETGIILKRQQEDKMKSQIKTEGAGLLLKPKQDIVVKSAAQIVHEQHGNMVPAARMAMTRRVRPLVSLNPYLDNWTIKVRVTNKGIMRTYKNARGEGCVFNVELTDEDGTQIRATMFNVAARKFYEKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEATNEESFVPETRFKFVPIDQLGQYVNRNELVDVIGVVQNVSPTMSIRRKSNNETVPKRDITIADETKKTVIVSLWNENAINVGQELSDLAGNSPLVAIKSLKVGDFQGVSLSTIGRSLVLANPDIPEAKKLRSWYESEGKDASLASMSSGTSSVSSNGMRSVFSDRVSLFHITSRPSLGEDKPAFFSVRAHISHIKPDQTMWYRACKTCNKKVTETIGAGYWCERCQKNYEECSLRYIMVVKVADRSGEAFISVFNEEAEKIVGCPAEELDSLKSQEGEDSLYQLKLKQATWTPYLFWVSVSQNEYNNEKRQRITARAVVPMDFAAESRFLLEEISKMKFSQ 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3137 625 CDD RPA1_DBD_A 180 283 - -
Prci4g3137 625 CDD RPA1_DBD_C 454 620 IPR047192 -
Prci4g3137 625 CDD RPA1_DBD_B 313 419 - -
Prci4g3137 625 Gene3D - 291 431 IPR012340 -
Prci4g3137 625 Gene3D - 177 286 IPR012340 -
Prci4g3137 625 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Prci4g3137 625 PANTHER REPLICATION FACTOR A 1, RFA1 191 580 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci4g3137 625 FunFam Replication protein A subunit 434 621 - -
Prci4g3137 625 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Prci4g3137 625 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
Prci4g3137 625 NCBIfam replication factor-a protein 1 (rpa1) 3 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci4g3137 625 SUPERFAMILY Nucleic acid-binding proteins 447 621 IPR012340 -
Prci4g3137 625 FunFam Replication protein A subunit 290 429 - -
Prci4g3137 625 Gene3D - 4 112 IPR012340 -
Prci4g3137 625 Pfam Replication factor-A C terminal domain 468 614 IPR013955 -
Prci4g3137 625 FunFam Replication protein A subunit 177 286 - -
Prci4g3137 625 Gene3D - 432 621 IPR012340 -
Prci4g3137 625 Pfam Replication protein A OB domain 306 402 IPR031657 -
Prci4g3137 625 SUPERFAMILY Nucleic acid-binding proteins 296 424 IPR012340 -
Prci4g3137 625 SUPERFAMILY Nucleic acid-binding proteins 1 107 IPR012340 -
Prci4g3137 625 FunFam Replication protein A subunit 4 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3137 Prci-Chr4 42632963 42637555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3137 1 625 Core DNA Replication Machinery Family AT5G08020 66.613 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3137 K07466 - qsa:O6P43_002222 969.533