Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3088 ATGTCAGAGCAGGAAACACGGTCATGGGGCTTCCTGTACATCTGTTTCTTAATGCTTTTTTCAGGTAAAATTGTTGCCCACGATTCTCTGGACACGGAGAGACAGATTCTGCTACAGCTGAGAACTTACCTTAACAATCAAACTCGGACAGATCGAGGAAGATACAAACTCTGGAACACAAACAGCTCAAATCCGTGTGAATGGCCAGGAATCTCATGCAGCCCAAAGGGGACAAACTCGGCCGCCAGAGTGGTCGGCGTAGACCTTTCCGACAGCAGCATCGCTGGCGAGATTTTCCAGAATTTCTCGCTGCTTACCGAGCTCACCCACCTTGACCTTTCCACAAACACCATCACCGGAGAAATCCCAGAGGATTTAAGACGATGCAGTAACCTCGTATATCTTAATCTCTCCCATAATCTTCTTGAGGGGGAGATGGATTTAACTGGATTGACAAGATTAGAGACGCTGGACTTGTCGGAAAACAGGCTTCATGGGGACATAGGGTTGAATTTTCCTGCCATTTGTGACAACTTAGTTACTCTGAATGTTTCTGGGAATAACTTCACCGGTTCGATTGATCATCGCTTCGATCAGTGTTTAAAATTGCAGTACTTGGATTTGAGCACCAACAATCTCAGTGGGGGTATTTGGATGGGATTTGCGAGGCTCAAGGAGTTTTCAGTTTCAGAGAACTATATCACTGGGCATCTGAATGAAGAAGCATTCCCAGAAAATTGTAAGCTGGAAGTACTCGACGTTTCATACAATCGGTTTACAGGAAATGCACCGAAGAATGTCAGTAAATGTACGAATCTTGCAATTCTGAATCTTTCAAGAAACAAATTTTCTGGGGATATTCCCGTTGAATTGGGATCCATCTCAAGCCTCCAAGCATTGTACTTCGCCAACAATACATTTTCAAGAAGCATCCCAGAGACACTTTCAAACTTGAAAAATCTAAATTTCTTGGATTTGAGCGGCAACGCTTTTGGTGGAGAGATACAAGACACACTTGGGAAGCTCAAGCAGGTAAAGTTCCTCCTTTTGTATTCGAATGCTTACACAGGAGGATTAAACTCATCAGGGATTCTCAAATTACCCAACATCTCTCGCTTAGACCTTAGTAACAACAGTTTTTCAGGTCCATTGCCTATTGAAATCTCTCAGATGACATCTCTGAAGTTCTTAATGTTAGCCCACAATCAATTCACTGGACATATTCCTCCTCAGTTTGGAAATTTGGCTCAGCTTCAAGCACTTGATATCTCTTTCAACAATTTAACAGGGCCAATCCCGCCAAGCCTGGGAAACTTGGATTCTCTTTTGTGGTTAATGCTTGCAAACAATTCATTGAGTGGAGACATACCCAAAGAGCTGGGAAACTGCACAAGTTTGCTGTGGCTAAACCTTGAAAACAATAAGCTTACTGGGAATTTCCCTCGTGAATTGAGCAACATTGGAAGAAACGCCATGGCCACGTTTGATTTGAATCGGAATGAATTCAATAAAATCCCTGCTGGTTCAGTTGAATGTTCGGCAATGAAGAGATGGATACCTGCGGATTACCCTCCTTTCAGCTTTGTATACAGCATCCTCACGAGAAAAAATTGCATAACCATTTGGGATAGGTTACTTAAAGGTTATGGAATCTTCTCGATTTGCTCATCTGGGTCCTCTTTTAGACTGAAGGAGATCTCTGGGTATGTTCAGTTAAGCGGGAATGATCTCATCGGCGAAGTTCCTTCAGAAATTGGGAACATGCAGAATTTCAGTATGCTGCACTTGGGGATGAACAAATTTTCCGGCAAAATCCCTGCGGTGATGGGAGATCTGCCACTTGTGGTGTTGAACGTAACAAGAAACAATTTTTCAGGTGAGGTTCCATGGGACATTGGAAAGCTTAAATGTCTTCGGAATCTGGATTTGTCCTACAACAATTTCTCAGGGACATTCCCGACAAGCTTGAACAACTTGACAGAGCTCAGTAAATTCAACATCTCTTACAATCCCTTCATTTCTGGTATGATCCCACCAACGGGACAATTAGCCACATTCGATAAAGATTCGTATTTGGGAGACCATCTCTTGACCCTACCGAGCTTCATCGATGACGCCCCAAACGACATAAAAAACACGACCTCTCGGAGAGACCACAAAATCAGAAACAGAAACCGCACGAAGCTGTCAATGTTCTTGGCTTTCCTGGCTATCACACTCGCTCTGTTGGTATTTGGGCTCCTCTCTTTCATAATATGCTCATTACCGAAAACCCGTTCACACGACCCAGAAGGATACCTATTGGAAGACACAAAAAACCAACACGATTCCGACAATTCGTTACCATGGTCATCTGACCTAATTAAGGTCGTTCATTTGAACAAGATAGCATTCACGCACACCGACATTCTAAGAGCCACCGGAAACTTCTCCGACGACAGAGTCATAGGAAAAGGCGGTTTTGGCACAGTGTACAGAGGAGTGTTCCCCGACGGAATAGAAGTCGCGGTTAAGAAGCTTCAAAGAGAAGGACTAGAAGGAGAAAGAGAGTTCAGAGCAGAAATGGAGGTTCTAAGCGGAAACGGTTTCGGCTGGCCACACCCCAATTTGGTCACACTATACGGGTGGTGCCTAAACGGGTCGGAGAAAATCCTAGTTTACGAATACATGGAGGGAGGAAGCTTGGAAGATGTTGTTACAGACAGAACAAGACTCACGTGGAAGAGAAGGCTAGAGATCTCCATTGACGTGGCTCGAGCATTGGTCCATTTGCACCACGAATGCTTCCCTCCAATTGTTCACAGAGACGTCAAGGCTAGCAATGTGCTTCTGGACAAACACGGGAAGGCTAAAGTCACAGACTTCGGGCTAGCTAGAGTAGTAGAAAATGGAGTGAGTCACGTGACCACCATGGTGGCCGGCACGGTGGGCTACGTGGCACCTGAGTACGGTCAGACATGGAAGGCCACAACGAAAGGTGATGTGTACAGCTTCGGAGTGTTGGCCATGGAGTTAGCCACCGGGAGGAGGGCGGTGGACGGTGGGGAGGAGTGCCTGTTGGAGTGGGCCCGGCGAGTCACAGGCTGTCGATATGGGCTTGGGCCCGTAGTAAGTCGGACCATGATACCAGTCTTGCTAATGGGTTCTGGGCTCGGAGAGGGAGCGGAGGAGATGGGTGAGTTGTTACGTATTGGGATACAGTGCACGGCAGAGGCACCGCAAGCTAGACCCAATATGAAGGAGGTGTTATCTATGCTGGCTAACATACTGAACCCAAAAGGGGAGTAA 3288 0.4586 MSEQETRSWGFLYICFLMLFSGKIVAHDSLDTERQILLQLRTYLNNQTRTDRGRYKLWNTNSSNPCEWPGISCSPKGTNSAARVVGVDLSDSSIAGEIFQNFSLLTELTHLDLSTNTITGEIPEDLRRCSNLVYLNLSHNLLEGEMDLTGLTRLETLDLSENRLHGDIGLNFPAICDNLVTLNVSGNNFTGSIDHRFDQCLKLQYLDLSTNNLSGGIWMGFARLKEFSVSENYITGHLNEEAFPENCKLEVLDVSYNRFTGNAPKNVSKCTNLAILNLSRNKFSGDIPVELGSISSLQALYFANNTFSRSIPETLSNLKNLNFLDLSGNAFGGEIQDTLGKLKQVKFLLLYSNAYTGGLNSSGILKLPNISRLDLSNNSFSGPLPIEISQMTSLKFLMLAHNQFTGHIPPQFGNLAQLQALDISFNNLTGPIPPSLGNLDSLLWLMLANNSLSGDIPKELGNCTSLLWLNLENNKLTGNFPRELSNIGRNAMATFDLNRNEFNKIPAGSVECSAMKRWIPADYPPFSFVYSILTRKNCITIWDRLLKGYGIFSICSSGSSFRLKEISGYVQLSGNDLIGEVPSEIGNMQNFSMLHLGMNKFSGKIPAVMGDLPLVVLNVTRNNFSGEVPWDIGKLKCLRNLDLSYNNFSGTFPTSLNNLTELSKFNISYNPFISGMIPPTGQLATFDKDSYLGDHLLTLPSFIDDAPNDIKNTTSRRDHKIRNRNRTKLSMFLAFLAITLALLVFGLLSFIICSLPKTRSHDPEGYLLEDTKNQHDSDNSLPWSSDLIKVVHLNKIAFTHTDILRATGNFSDDRVIGKGGFGTVYRGVFPDGIEVAVKKLQREGLEGEREFRAEMEVLSGNGFGWPHPNLVTLYGWCLNGSEKILVYEYMEGGSLEDVVTDRTRLTWKRRLEISIDVARALVHLHHECFPPIVHRDVKASNVLLDKHGKAKVTDFGLARVVENGVSHVTTMVAGTVGYVAPEYGQTWKATTKGDVYSFGVLAMELATGRRAVDGGEECLLEWARRVTGCRYGLGPVVSRTMIPVLLMGSGLGEGAEEMGELLRIGIQCTAEAPQARPNMKEVLSMLANILNPKGE 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3088 1095 CDD STKc_IRAK 816 1089 - -
Prci4g3088 1095 SMART LRR_sd22_2 635 661 - -
Prci4g3088 1095 SMART LRR_sd22_2 415 441 - -
Prci4g3088 1095 SMART LRR_sd22_2 105 128 - -
Prci4g3088 1095 SMART LRR_sd22_2 151 172 - -
Prci4g3088 1095 FunFam Leucine-rich repeat receptor protein kinase MSP1 772 889 - -
Prci4g3088 1095 Pfam Leucine rich repeat 417 476 IPR001611 GO:0005515
Prci4g3088 1095 PRINTS Leucine-rich repeat signature 108 121 - -
Prci4g3088 1095 PRINTS Leucine-rich repeat signature 151 164 - -
Prci4g3088 1095 SUPERFAMILY RNI-like 83 289 - -
Prci4g3088 1095 Gene3D Ribonuclease Inhibitor 30 312 IPR032675 -
Prci4g3088 1095 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Prci4g3088 1095 Gene3D Phosphorylase Kinase; domain 1 773 889 - -
Prci4g3088 1095 SUPERFAMILY L domain-like 221 482 - -
Prci4g3088 1095 SUPERFAMILY Protein kinase-like (PK-like) 790 1086 IPR011009 -
Prci4g3088 1095 FunFam Putative LRR receptor-like serine/threonine-protein kinase 342 503 - -
Prci4g3088 1095 FunFam Leucine-rich repeat receptor-like protein kinase 890 1095 - -
Prci4g3088 1095 Pfam Leucine Rich repeat 246 261 IPR001611 GO:0005515
Prci4g3088 1095 ProSitePatterns Protein kinases ATP-binding region signature. 816 839 IPR017441 GO:0005524
Prci4g3088 1095 Pfam Protein kinase domain 811 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g3088 1095 Gene3D Transferase(Phosphotransferase) domain 1 890 1094 - -
Prci4g3088 1095 ProSiteProfiles Protein kinase domain profile. 810 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g3088 1095 SMART serkin_6 810 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g3088 1095 Gene3D Ribonuclease Inhibitor 313 407 IPR032675 -
Prci4g3088 1095 Gene3D Ribonuclease Inhibitor 408 522 IPR032675 -
Prci4g3088 1095 Gene3D Ribonuclease Inhibitor 553 713 IPR032675 -
Prci4g3088 1095 SUPERFAMILY L domain-like 569 678 - -
Prci4g3088 1095 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Prci4g3088 1095 SMART LRR_typ_2 439 463 IPR003591 -
Prci4g3088 1095 SMART LRR_typ_2 151 171 IPR003591 -
Prci4g3088 1095 SMART LRR_typ_2 318 342 IPR003591 -
Prci4g3088 1095 SMART LRR_typ_2 415 438 IPR003591 -
Prci4g3088 1095 SMART LRR_typ_2 105 129 IPR003591 -
Prci4g3088 1095 SMART LRR_typ_2 635 659 IPR003591 -
Prci4g3088 1095 SMART LRR_typ_2 391 414 IPR003591 -
Prci4g3088 1095 ProSiteProfiles Leucine-rich repeat profile. 131 152 IPR001611 GO:0005515
Prci4g3088 1095 PANTHER LEUCINE RICH REPEAT KINASE 2 364 1089 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3088 Prci-Chr4 42299919 42306079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3088 12 1089 Receptor kinase-like Gene Family AT1G55610 31.776 1.02e-147 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Prci4g3088 Pkinase 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3088 - - gmx:100783886 1495.72