Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3078 ATGGGTTGTGTGAATTCGAAGCAGGCGGTATCGGTGACGCCTGCTGTTGACCACTCCGGTGTGTTTCGCGGCAATGCGGGTACGGGGAATTCTGGAAGGAATTTAGGAGAGTTGGACAAGAAGAAGAGTGAGTCAGTGGAGCTGAGTAGAAGCGAGGTGGGGGAGTCCGGGAGGGCGAGTTCAAATGGAGGTTGTGAGTCGTTAAGCTTCAGATTGGGGAATCTGCAGAAGTATGTACAAGGAGAGCAAGTGGCAGCGGGTTGGCCGGGTTGGCTCACCGCAGTCGCCGGTGAAGCCATTCAGGGTTGGGTGCCCCTCCGAGCCGATGCGTTTGAGAAACTTGAGAAGATTGGGCAAGGTACATACAGCAGTGTCTTCCGAGCGCGAGAACTTGAGACAGGGAAGATAGTGGCTCTGAAGAAGGTGCGGTTTGACAACTTTGAGCCCGAAAGTGTAAGGTTCATGGCTCGAGAAATAATGATTCTCAGAAGGCTTGATCATCCAAACATTATAAAATTGGAGGGCTTGATTACTTCTAAATTGTCCTGTAGCATATATCTTGTATTCGAGTATATGGAACATGACATTACAGGGCTCTTATCCTCCCCTGATATCAAGTTTAGTGAACCGCAGATTAAATGCTACATGAAGCAGTTGTTGTCTGGACTTGACCATTGTCATTCACGGGGTGTAATGCATCGAGACATCAAAGGATCTAATCTTCTAGTGAATAATGAAGGGATACTAAAGGTTGCTGATTTTGGACTGGCGAACTTCTCAAATTCTGGGAACAAACAGCCCCTCACAAGTCGTGTAGTTACATTGTGGTACCGTCCTCCTGAGCTTTTACTGGGTTCAACTGACTATGGTCCGTCTGTGGATCTCTGGAGCATTGGCTGCGTGTTTGCTGAGCTACTTGTTGGGAAGCCTATCCTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGCGGTTCTCCACCTGAAGAATACTGGAAAAAGTCCAGACTCCCTCATGCAACCTTGTTCAGGCCACAGCAACCATATAATAGTTGTCTCCGGGAGACCTTCAAAGATTTGCCTTCAACTTGTGTGAACTTGCTACAGACTCTTCTTTCCATTGAACCATACAAACGTGGAACTGCCTCTTCCGCTCTCTCATCAGAGTATTTCAAAACAAAGCCATATGCTTGTGAACCATCAAGCTTGCCGGTATACCCACCTAGCAAGGAGATTGATGTGAAACAGCAGGAGGAGTCAAGGAGGAAAAAGATCGGTGGCAGAGCACGTGGATCTGAAACAAGAAAGCCATCAAGAAAGCCATTAGGATTCAACAAATTAGTCCCAACAGAGGATTTGGCAAGTCAAACCCGGAAATTCCAAAGGGTGAATGGCAGGTCAGTCCACATCCTTAAAGAAGGGATCCCCAACGTAAGTAAGGAGGAACCAAAGGCATCTAATGATAAACCCGATGATGCGTCTCATACGAAGAATGCATCTCAAGGAGAGATTCCCTTTTCCGGGCCATTGCAAGTTTCCACATCAAGTGGCTTTGCATGGGCAAAAAGACGAAAAGATGACATTTCAATAAGATCCCACTGTCGATCTATTTCAAGAGGGCATATTATCAATCCATTGGAGTCTGCTGTACCAAATTCAATGAATAATATTGATTCCAGAAACATGGAAAATAAGGATTGTCTGGGACGCTCCAACTCTAGGAGTCGTGATCCACTTGAAATCCCTAAGATTGCCATGCAAAATCAATGGAGCAAGTTTGATCGCCCAGATTCTTTTGACGCTTCTGACGAATACCACTCACAAGAGCTATGTATGGCGCTTTATCATAGAGAGGATTCAATATCCAAGAGAAGTAACCTGAGTTATCAGGATCAAGGAGAGAAGGTTGAGTTTTCAGGACCTTTGCTATCTCAAATGCATACTGTTGATGAGCTCTTAGAAAAACATGAGCGCCACATCCGCAGAACAGTCCGAAGATCTTGGTTTCAAAGAGGTAAGAAGCATGGGAAACAAGTGTAA 2052 0.4566 MGCVNSKQAVSVTPAVDHSGVFRGNAGTGNSGRNLGELDKKKSESVELSRSEVGESGRASSNGGCESLSFRLGNLQKYVQGEQVAAGWPGWLTAVAGEAIQGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSKLSCSIYLVFEYMEHDITGLLSSPDIKFSEPQIKCYMKQLLSGLDHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSIGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKSRLPHATLFRPQQPYNSCLRETFKDLPSTCVNLLQTLLSIEPYKRGTASSALSSEYFKTKPYACEPSSLPVYPPSKEIDVKQQEESRRKKIGGRARGSETRKPSRKPLGFNKLVPTEDLASQTRKFQRVNGRSVHILKEGIPNVSKEEPKASNDKPDDASHTKNASQGEIPFSGPLQVSTSSGFAWAKRRKDDISIRSHCRSISRGHIINPLESAVPNSMNNIDSRNMENKDCLGRSNSRSRDPLEIPKIAMQNQWSKFDRPDSFDASDEYHSQELCMALYHREDSISKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLEKHERHIRRTVRRSWFQRGKKHGKQV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3078 683 MobiDBLite consensus disorder prediction 479 500 - -
Prci4g3078 683 Gene3D Phosphorylase Kinase; domain 1 98 193 - -
Prci4g3078 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Prci4g3078 683 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g3078 683 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Prci4g3078 683 FunFam probable serine/threonine-protein kinase At1g54610 98 193 - -
Prci4g3078 683 SUPERFAMILY Protein kinase-like (PK-like) 105 400 IPR011009 -
Prci4g3078 683 MobiDBLite consensus disorder prediction 35 51 - -
Prci4g3078 683 PANTHER CELL DIVISION PROTEIN KINASE 109 399 - -
Prci4g3078 683 MobiDBLite consensus disorder prediction 416 444 - -
Prci4g3078 683 MobiDBLite consensus disorder prediction 20 63 - -
Prci4g3078 683 FunFam probable serine/threonine-protein kinase At1g54610 194 434 - -
Prci4g3078 683 MobiDBLite consensus disorder prediction 411 514 - -
Prci4g3078 683 Gene3D Transferase(Phosphotransferase) domain 1 194 434 - -
Prci4g3078 683 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g3078 683 CDD STKc_CDK9_like 111 395 - -
Prci4g3078 683 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3078 Prci-Chr4 42252768 42260232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3078 103 455 Core Cell Cycle Gene Families AT5G10270 48.238 4.11e-114 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Prci4g3078 Pkinase 8.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3078 - - gmx:100803328 1115.91