Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3070 ATGGCGGAGGAGGAATCGGCTTCGTCTCCCACTGTGTTGAGCATGGAGGGTCTTGACGATGTGGAGGACTACGTTTTGGCATCCCAACCGGAGGGTTTGACAAGGGAAACATACCATCATGTTGTTGAACTTGTGCAGAATGGCAATGTAGCATTTCGGGATAACCGTATGGAAGAGGCGATCAACTTTTACTCTAGAGCAAATAGCATCAAGACTAGTGATCCTGTTATACTCAGTAACCGAAGTGCAGCTTATATCTGGATTAGCCAATTTTTAAAACACAGACCTCCATCAGCTTCAGAATATAGTCCATTGAGTGGGCTTGATCCTACAACGCATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTCAACATCCGAAGTAGTTCAGTAAAATCGTACCTTTTAAAGGCCAATGCTCTTTATCTGTTGGAGAAATATGAGATGGCTCGGGATGTTATTCTTTCAGGCCTTCAGGTCGATCCATATAGTAATTCTCTCCGGATGTCTCTCTCAAATCTGGATAGAGCATTGGCTAGTTTGGCAAGGATGAGTACACATGGACAGCCAGAGCGCAGTGATGACTTTGATTGCACTCTTTGCCTCAAGTTACTTTATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCGGTCATGTCTATTTCAGTCCATGGATCGTGGCAACAGGTGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACGTGTTCTGTCAGTGTGACATTGAAAAACATTATACAAAAGAACTTTCTGGAGGAATATGCTGAAAGGAGGCAAGAGAATGACAATTTGACCAACTTCGGCTTAGATTTGATCCCTCTTTTTGTCATGGATGTTGTCATTCCATGCCAAAAGTTCCCCCTCCATATATTTGAACCTCGTTATAGACTGATGGTAAGAAGAATAATGGAAGGAAATCGTCGGATGGGAATGGTTATAATTGATTCTGCAACAGATTCCCTCGCTGAGTTTGCCTGTGAAGTGGAAATTACTGAGTGCGAACCACTTCCAGATGGGCGTTTCTATATAGAGATTGAAAGTCGTAGGAGATTTCGTATCATCCGATCCTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATTCAGGATATTATGCCGTTGGAAGGTACACGAGAAAGAGAAGATTTACAGGAAATAACAAATAACGCAGCAGAAAGTGCTCGATCATGGATCAGAAGGGCTAAAGAGGCAGCAGGACAAGATCAAAGAAGGCTCGAGAGACTGTTGAATGTTGAAGTTATGATGCCCCCTCTCCAAGACCCTGAGCGCTTCAGTTTCTGGCTTGCTACCTTATCAAACCGGAGGCCTTCAGAAAAACTGGATCTTCTACGCTTGAGAGATACTCAAGAGAGAATCAGACGTGGTCTGATATATATGCGAGCTGAGGAACAAGGCTGCAGAATCCAGTAA 1470 0.4388 MAEEESASSPTVLSMEGLDDVEDYVLASQPEGLTRETYHHVVELVQNGNVAFRDNRMEEAINFYSRANSIKTSDPVILSNRSAAYIWISQFLKHRPPSASEYSPLSGLDPTTHAELGLKDAEKLVNIRSSSVKSYLLKANALYLLEKYEMARDVILSGLQVDPYSNSLRMSLSNLDRALASLARMSTHGQPERSDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSVSVTLKNIIQKNFLEEYAERRQENDNLTNFGLDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNRRMGMVIIDSATDSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPLEGTREREDLQEITNNAAESARSWIRRAKEAAGQDQRRLERLLNVEVMMPPLQDPERFSFWLATLSNRRPSEKLDLLRLRDTQERIRRGLIYMRAEEQGCRIQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3070 489 SUPERFAMILY PUA domain-like 283 479 IPR015947 -
Prci4g3070 489 Pfam Zinc finger, C3HC4 type (RING finger) 199 236 - -
Prci4g3070 489 Pfam ATP-dependent protease La (LON) substrate-binding domain 283 479 IPR003111 -
Prci4g3070 489 Gene3D Tetratricopeptide repeat domain 39 177 IPR011990 GO:0005515
Prci4g3070 489 PANTHER RING FINGER PROTEIN 127 22 481 - -
Prci4g3070 489 SMART lon_5 282 481 IPR003111 -
Prci4g3070 489 SUPERFAMILY TPR-like 40 176 IPR011990 GO:0005515
Prci4g3070 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 278 IPR013083 -
Prci4g3070 489 SMART tpr_5 41 74 IPR019734 GO:0005515
Prci4g3070 489 SMART tpr_5 132 165 IPR019734 GO:0005515
Prci4g3070 489 Gene3D - 281 383 IPR046336 -
Prci4g3070 489 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Prci4g3070 489 SUPERFAMILY RING/U-box 194 262 - -
Prci4g3070 489 SMART ring_2 199 236 IPR001841 -
Prci4g3070 489 ProSiteProfiles Lon N-terminal domain profile. 280 481 IPR003111 -
Prci4g3070 489 CDD RING-HC_LONFs_rpt2 196 240 - -
Prci4g3070 489 ProSiteProfiles Zinc finger RING-type profile. 199 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3070 Prci-Chr4 42203758 42212905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3070 187 240 C3H Transcription Factor Family AT1G74990 36.842 5.12e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3070 - - lja:Lj0g3v0312049.1 788.104