Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3068 ATGGCGGAGGAGGAATCGGCTTCGTCTCCCACTGTGTTGAGCATGGAGGGTCTTGACGATGTGGAGGACTACGTTTTGGCATCCCAACCGGAGGGTTTGACAAGGGAAACATACCATCATGTTGTTGAACTTGTGCAGAATGGCAATGTAGCATTTCGGGATAACCGTATGGAAGAGGCGATCAACTTTTACTCTAGAGCAAATAGCATCAAGACTAGTGATCCTGTTATACTCAGTAACCGAAGTGCAGCTTATATCTGGATTAGCCAATTTTTAAAACACAGACCTCCATCAGCTTCAGAATATAGTCCATTGAGTGGGCTTGATCCTACAACGCATGCTGAACTTGGTTTGAAGGATGCTGAGAAGCTTGTCAACATCCGAAGTAGTTCAGTAAAATCGTACCTTTTAAAGGCCAATGCTCTTTATCTGTTGGAGAAATATGAGATGGCTCGGGATGTTATTCTTTCAGGCCTTCAGGTCGATCCATATAGTAATTCTCTCCGGATGTCTCTCTCAAATCTGGATAGAGCATTGGCTAGTTTGGCAAGGATGAGTACACATGGACAGCCAGAGCGCAGTGATGACTTTGATTGCACTCTTTGCCTCAAGTTACTTTATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCGGTCATGTCTATTTCAGTCCATGGATCGTGGCAACAGGTGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACGTGTTCTGTCAGTGTGACATTGAAAAACATTATACAAAAGAACTTTCTGGAGGAATATGCTGAAAGGAGGCAAGAGAATGACAATTTGACCAACTTCGGCTTAGATTTGATCCCTCTTTTTGTCATGGATGTTGTCATTCCATGCCAAAAGTTCCCCCTCCATATATTTGAACCTCGTTATAGACTGATGGTAAGAAGAATAATGGAAGGAAATCGTCGGATGGGAATGGTTATAATTGATTCTGCAACAGATTCCCTCGCTGAGTTTGCCTGTGAAGTGGAAATTACTGAGTGCGAACCACTTCCAGATGGGCGTTTCTATATAGAGATTGAAAGTCGTAGGAGATTTCGTATCATCCGATCCTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATTCAGGATATTATGCCGTTGGAAGGTACACGAGAAAGAGAAGATTTACAGGAAATAACAAATAACGCAGCAGAAAGTGCTCGATCATGGATCAGAAGGGCTAAAGAGGCAGCAGGACAAGAATTCGATACAGATCAAAGAAGGCTCGAGAGACTGTTGAATGTTGAAGTTATGATGCCCCCTCTCCAAGACCCTGAGCGCTTCAGTTTCTGGCTTGCTACCTTATCAAACCGGAGGCCTTCAGAAAAACTGGATCTTCTACGCTTGAGAGATACTCAAGAGAGAATCAGACGTGGTCTGATATATATGCGAGCTGAGGAACAAGGCTGCAGAATCCAGTAA 1482 0.4379 MAEEESASSPTVLSMEGLDDVEDYVLASQPEGLTRETYHHVVELVQNGNVAFRDNRMEEAINFYSRANSIKTSDPVILSNRSAAYIWISQFLKHRPPSASEYSPLSGLDPTTHAELGLKDAEKLVNIRSSSVKSYLLKANALYLLEKYEMARDVILSGLQVDPYSNSLRMSLSNLDRALASLARMSTHGQPERSDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSVSVTLKNIIQKNFLEEYAERRQENDNLTNFGLDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNRRMGMVIIDSATDSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPLEGTREREDLQEITNNAAESARSWIRRAKEAAGQEFDTDQRRLERLLNVEVMMPPLQDPERFSFWLATLSNRRPSEKLDLLRLRDTQERIRRGLIYMRAEEQGCRIQ 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3068 493 Gene3D - 281 383 IPR046336 -
Prci4g3068 493 ProSiteProfiles Lon N-terminal domain profile. 280 485 IPR003111 -
Prci4g3068 493 SMART lon_5 282 485 IPR003111 -
Prci4g3068 493 SUPERFAMILY RING/U-box 194 262 - -
Prci4g3068 493 Gene3D Tetratricopeptide repeat domain 39 177 IPR011990 GO:0005515
Prci4g3068 493 SUPERFAMILY TPR-like 40 176 IPR011990 GO:0005515
Prci4g3068 493 SUPERFAMILY PUA domain-like 283 483 IPR015947 -
Prci4g3068 493 PANTHER RING FINGER PROTEIN 127 22 485 - -
Prci4g3068 493 Pfam Zinc finger, C3HC4 type (RING finger) 199 236 - -
Prci4g3068 493 SMART tpr_5 41 74 IPR019734 GO:0005515
Prci4g3068 493 SMART tpr_5 132 165 IPR019734 GO:0005515
Prci4g3068 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 278 IPR013083 -
Prci4g3068 493 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Prci4g3068 493 SMART ring_2 199 236 IPR001841 -
Prci4g3068 493 CDD RING-HC_LONFs_rpt2 196 240 - -
Prci4g3068 493 ProSiteProfiles Zinc finger RING-type profile. 199 237 IPR001841 -
Prci4g3068 493 Pfam ATP-dependent protease La (LON) substrate-binding domain 283 483 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3068 Prci-Chr4 42203756 42212905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3068 187 240 C3H Transcription Factor Family AT1G74990 36.842 5.03e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3068 - - lja:Lj0g3v0312049.1 782.326