Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g3006 ATGGTTCACGTTTCATTCTACCGTAACTATGGGAAGACCTTCAAGAAGCCTCGCCGTCCATATGAGAAGGAACGTTTGGATGCTGAGTTGAAGCTTGTGGGAGAGTATGGACTTCGCTGCAAAAGGGAGCTGTGGAGGGTTCAGTACGCTTTGAGTCGTATCCGTAATAACGCAAGGGAGCTTTTGACCCTTGATGAGAAGAACCCACGTCGGATCTTCGAGGGTGAAGCTCTTCTGCGAAGGATGTTTCGTTATGGGCTTTTGGACGAGAGTCAGAACAAGCTCGATTACGTCTTGGCTTTGACCGTGGAGAACTTCCTCGAGCGTCGTCTTCAGACACTTGTGTTCAAATCAGGGATGGCCAAGTCAATTCATCATGCTAGGGTCCTCATCAGGCAGAGGCATATCAGGGTTGGGAGGCAGGTGGTGAACATCCCATCTTTCATGGTGCGAGTTGATTCCCAGAAGCACATTGATTTTTCACTCACAAGTCCATTCGGAGGTGGACGTCCTGGAAGAGTGAAGAGAAAGAACCAAAGGGCTGCTGCCAAGAAGGCTGCTGGTGGAGATGGAGATGAGGAGGATGAGGAGTAA 594 0.4983 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARELLTLDEKNPRRIFEGEALLRRMFRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQRAAAKKAAGGDGDEEDEE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g3006 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Prci4g3006 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Prci4g3006 197 FunFam 40S ribosomal protein S9 108 188 - -
Prci4g3006 197 MobiDBLite consensus disorder prediction 164 197 - -
Prci4g3006 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Prci4g3006 197 CDD S4 109 153 - -
Prci4g3006 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 183 IPR022801 GO:0003735|GO:0015935|GO:0019843
Prci4g3006 197 NCBIfam 30S ribosomal protein S4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Prci4g3006 197 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Prci4g3006 197 Pfam S4 domain 109 152 IPR002942 GO:0003723
Prci4g3006 197 Gene3D - 108 165 IPR036986 GO:0003723
Prci4g3006 197 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Prci4g3006 197 SMART s4_6 109 180 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g3006 Prci-Chr4 41713262 41715037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g3006 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 92.513 2.59e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g3006 K02997 - gmx:100305663 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g3006 4 41713262 41715037 Prci9g1555 9 28288955 28290688 ECH
Prci4g3006 4 41713262 41715037 Prci4g3006 4 41713262 41715037 ECH