LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci4g2986	ATGGAGTTTCCTTCAGGAAGATCTGACCATGACAGTAGAGCCAAGGAAGAGAAGAGGAGTGAATCTGTTGGTGCTGGTGATGAAGATCCTCGAAAAGAAAAGATTGATATTGAGGCGCCACCAGTGGATACTTCTGCACCAATAATTGTATCTTCAGCCAAAAAGGAAGAGGCTGAGAAGCTAGAATCTGCGAAAACGGAAATGGGTGAGGTGAGAGAAGAAAACCAAAGATTGAAGCAGTGTTTGGATCGAGTTCTGAAGGATTACAGAACACTGCAAATGCAATTCAAAGATATATTTCAAAAGGAAACCAAAGAATCAACTTCTGATCATGATCATAGTGATGGTCGAGAAATTATTATAACTGAGGAATATTCTGATGAGCTAGTTTCTCTGAGCCTTGGAAGAGCTATTCCCAGTAATAATGATAATCCAATTAGAAACCATGAGAAAAGCAAAGGTTTGAAGCCATTATTATTGAAGGATATTGAAGAATGCGATGAAGAGGACTTGGCTCTTGGATTGGACTGCAAATTCGAAACATCAAAGTCAGGAAGCATAACTCATGATGAGGATGAGGATAATAATAATAATTCGCCAAAGATTAATCCAAGCCATACCACTAGTTCTGAAGAGCCGCCCAAGGAAGAGGAGACCTGGCCACCAAGTAAAGCACTCAAAACAACCAGAGATACTACTACTTCTGGAGAAGACGAAGTTTCCCAACACAATCCTGCAAAGAAAGCTAGGGTTTGTGTGAGAGCAAGATGTGACGCCCAAACTATGAACGATGGATGTCAATGGAGAAAATATGGACAAAAAATCTCAAAGGGAAATCCATGCCCTAGAGCTTATTATCGTTGCACAGTTGCACCATCATGCCCAGTAAAAAAGCAGGTGCAAAGATGTGCTGAGGATTTGTCCGTTTTAGTTACCACTTATGAGGGAATCCACAACCACCCTCTTCCTCTCTCAGCCACCGCCATGGCTTCCACTACTTCTGCAGCTGTTTCCATGCTTTTGTCTGGCTCTTCTTCATCAACTTCTTCAGCTCGCCCTTCATCCGCCACTTCAGCTGATCTCTATGGCCTGAACTTCTCCTTGTCAGATGGTTTCAGCAGATCAAAGCCATTATATCTCTCCAATCCTTCATTCTCTTCATTGCCTTCTCACCCAACAATCACTCTTGACCTCACCACAAATCCTGCAGCCTCCAGGTTCATGACCTCATCATCATCAAACTACAACCCAGCTCCACGATCGTCGTCGTCGTCGTCGTACCCTTCTTCTTCCACAAGTCTCAATTTTAGTTCCCCAAATAATAATAATAATTTTGTTAGCTATCACAGTAATAATAACAGGAACGTTTTCAGCTCCGTGAACCTTGGAAGGTCGACAGTGGATAGTATCTACAGTCTGCCTTTCGTGCAGAAGAACAGTGTTATCAACAGCACAACCCATCCTCCACCACCTGCTCTACCAGATACTATCGCCGCGGCAACCAAGGCCATCGCGGCGGACCCAAAGTTTCAGTCTGCTTTGGCAGTGGCGCTCAGTTCAATTATTGGCACAGGAAGTGGAATTAGAAGCAACAATAGTGGCGGTGCCGGAGAAAACTTGACTCAGCAAATGAAATGGGGAGGGCTGTTTCCAGCATTATGA	1662	0.4374	MEFPSGRSDHDSRAKEEKRSESVGAGDEDPRKEKIDIEAPPVDTSAPIIVSSAKKEEAEKLESAKTEMGEVREENQRLKQCLDRVLKDYRTLQMQFKDIFQKETKESTSDHDHSDGREIIITEEYSDELVSLSLGRAIPSNNDNPIRNHEKSKGLKPLLLKDIEECDEEDLALGLDCKFETSKSGSITHDEDEDNNNNSPKINPSHTTSSEEPPKEEETWPPSKALKTTRDTTTSGEDEVSQHNPAKKARVCVRARCDAQTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVKKQVQRCAEDLSVLVTTYEGIHNHPLPLSATAMASTTSAAVSMLLSGSSSSTSSARPSSATSADLYGLNFSLSDGFSRSKPLYLSNPSFSSLPSHPTITLDLTTNPAASRFMTSSSSNYNPAPRSSSSSSYPSSSTSLNFSSPNNNNNFVSYHSNNNRNVFSSVNLGRSTVDSIYSLPFVQKNSVINSTTHPPPPALPDTIAAATKAIAADPKFQSALAVALSSIIGTGSGIRSNNSGGAGENLTQQMKWGGLFPAL	553

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci4g2986	553	Gene3D	WRKY domain	246	324	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Prci4g2986	553	MobiDBLite	consensus disorder prediction	210	224	-	-
	Prci4g2986	553	MobiDBLite	consensus disorder prediction	1	39	-	-
	Prci4g2986	553	Pfam	WRKY DNA -binding domain	263	321	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Prci4g2986	553	MobiDBLite	consensus disorder prediction	409	436	-	-
	Prci4g2986	553	SMART	WRKY_cls	262	322	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Prci4g2986	553	ProSiteProfiles	WRKY domain profile.	257	323	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Prci4g2986	553	Coils	Coil	54	81	-	-
	Prci4g2986	553	SUPERFAMILY	WRKY DNA-binding domain	255	323	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Prci4g2986	553	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	51	529	IPR044810	GO:0003700
	Prci4g2986	553	MobiDBLite	consensus disorder prediction	1	75	-	-
	Prci4g2986	553	MobiDBLite	consensus disorder prediction	231	245	-	-
	Prci4g2986	553	MobiDBLite	consensus disorder prediction	53	75	-	-
	Prci4g2986	553	FunFam	probable WRKY transcription factor 31	247	324	-	-
	Prci4g2986	553	MobiDBLite	consensus disorder prediction	184	245	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci4g2986	Prci-Chr4	41598119	41601507	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci4g2986	60	531	WRKY Transcription Factor Family	AT1G18860	40.546	8.98e-79	255

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Prci4g2986		WRKY	4.3e-23	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Prci4g2986	4	41598119	41601507	Prci9g1565	9	28358744	28362825	ECH
	Prci4g2986	4	41598119	41601507	Prci4g2986	4	41598119	41601507	ECH