Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2943 ATGTCTCGATCACTCTCCGCCACATCCACCAACTGCGATGCTGCCCCCGCCTCCGCCGGCGAGATCATGTTGTTCGGCGTTAGAGTCGTCGTTGATTCCATGAGGAAGAGTGTGAGTATGAATAATCTCTCGCAGTACGAACATCCTCAGGATGGCTCGCATAACAATAAGGAAGATGTTCTCACCGCCGGTTACGCCTCCGCCGACGATGCCGTTGTTCATAATTCCGGCAAGCACCGCGAGCGTGAGCGCAAACGAGGGGTTCCATGGACCGAGGAAGAACACAGGCTGTTTTTGCTGGGATTGCAGAAGGTAGGGAAGGGCGATTGGAGAGGGATCTCAAGGAACTATGTGAAGACGAGGACCCCAACACAGGTTGCGAGCCATGCTCAGAAGTACTTTCTTCGAAAAAGCAACCTTAATCGTCGACGTCGTAGATCCAGCTTATTCGACATTACCACTGATTCGGTTTCGGCAAATCCAGTGGAAGAACAGATCCAGCGTCAGGATAATATGCCTCATTCACATCTTGTGCACCCTGCATCCTCTGAAACTGGCAACATCAATGGATTTTCAGTGATGCCATTATATCCAATGGCTATTGGGTCTGGAGTGATTTCATTCCCGGGCGGGAATCCGGTGGAGAAGCTCCCTCTGGGGCATGGAAATTATGAACACAACGGTCTAATTCCTTCTGTTCCAGATCCAAAAGCTTCTGCTGTGTCTGATGTTGCCTTGTGTTCAAGCTCATCTTTTGATCTACCGACGCTGTCTCTTGGACTGTCCTTGTCGCCTGATCAGAGGAATACATCATCAAGGCACTCAAGTTTACATGCAGTGCCATGTTTCAACAATAATGGAGAAAGCATCATAAGTGTTGTTTGA 885 0.4938 MSRSLSATSTNCDAAPASAGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDGSHNNKEDVLTAGYASADDAVVHNSGKHRERERKRGVPWTEEEHRLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRKSNLNRRRRRSSLFDITTDSVSANPVEEQIQRQDNMPHSHLVHPASSETGNINGFSVMPLYPMAIGSGVISFPGGNPVEKLPLGHGNYEHNGLIPSVPDPKASAVSDVALCSSSSFDLPTLSLGLSLSPDQRNTSSRHSSLHAVPCFNNNGESIISVV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2943 294 SUPERFAMILY Homeodomain-like 84 139 IPR009057 -
Prci4g2943 294 ProSiteProfiles Myb-like domain profile. 82 134 IPR001005 -
Prci4g2943 294 CDD SANT 89 134 IPR001005 -
Prci4g2943 294 ProSiteProfiles SANT domain profile. 85 138 IPR017884 -
Prci4g2943 294 SMART sant 86 136 IPR001005 -
Prci4g2943 294 FunFam transcription factor MYB1R1 88 139 - -
Prci4g2943 294 Pfam Myb-like DNA-binding domain 89 134 IPR001005 -
Prci4g2943 294 Gene3D - 88 140 - -
Prci4g2943 294 PANTHER TRANSCRIPTION FACTOR KUA1 11 223 - -
Prci4g2943 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 85 137 IPR006447 GO:0003677
Prci4g2943 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 138 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2943 Prci-Chr4 41211991 41214159 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci4g2943 Myb_DNA-binding 5.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2943 - - gmx:780536 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2943 4 41211991 41214159 Prci9g1608 9 28632663 28634784 CCT