Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2933 ATGGCCTCTTCTTCCGCGCTTCGAGATCCTTCCAGACACTACACTTATAATCGCAAGCAAAAGTCTCTTGGCCTCTTGTGCACCAATTTCTTGAGCTTGTATAATCGAGATGGCGTTCACTTGATCGGCCTTGACGATGCGGCTGCGAGATTAGGGGTCGAGAGGCGGCGGATCTATGATATAGTTAATGTACTGGAGAGTGTCGGGGTTCTTGCAAGAAAAGCTAAGAATCAATATACTTGGAAAGGATTTGGGGCAATTCCGGGGGCCTTACAGGAGCTCAAAGAAGAAGGTATGAGGGAGAATTGCGATGCTTTTGATGGCAGTCAAGATAATGCAAAAGTATCTGATGATGAGGATGACGAAGAAACGTTGTCCAATCCCAGTACTGGAAGTCAGAATGACAAGCCTTGTCCCAATTCTACTCTCCTCAAATCTATGAAGAATGATAATCGAAGGGAAAAATCTCTTGCACTTCTCACTCAGAATTTTGTCAAGCTCTTTCTCTGCCACAATATGGAGTTGATTTCCCTCGATGAAGCTGCCAGATTGTTGCTCGGGGATGCCCATAATACGTCAATAATGAGGACGAAAGTAAGACGTCTATATGATATTGCAAATGTGCTGTCCTCCATGAACCTTATTGAGAAGACTCATACATCAGACACTAGAAAACCTGCTTTTAGATGGCTGGGCTTGGAGGGGAAAACAGAGAATGAGTCTATTCATAATTCAAATCCCGATGAATCCAGGAAAAGGATGTTTGGTAATGATATCACAAACATCAGTTTTAAGAGGAATAAAGTGGATTTATTCTCTAATGGGGACCTATGCCAGAATGCTAAGATATCAAATAAAATGGATGGTGATAACTGGCTCGGTCAGGCAGATAAAAGCCATCAAAATCAGGACTCAAAGCAGAGTTCAAGAAGCTATCAGTTTGGACCTTTCGCTCCTGTCTACGTCCCCAAAGTGAGCGCCTCTGATAATAATAATGCGAAGCGGGTCCATGATTGGGATAGTCTTGCAACTGCCTATCGTCCCCAGTATCAAAACCAAGCTTTGAGAGAACTCTTCAGCCATTACATGGAAGCGTGGAAATCATGGTACTCTGAAGTCGCTGGGAAGAGGCCAATCCACATTTTGTAA 1149 0.4352 MASSSALRDPSRHYTYNRKQKSLGLLCTNFLSLYNRDGVHLIGLDDAAARLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFGAIPGALQELKEEGMRENCDAFDGSQDNAKVSDDEDDEETLSNPSTGSQNDKPCPNSTLLKSMKNDNRREKSLALLTQNFVKLFLCHNMELISLDEAARLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGLEGKTENESIHNSNPDESRKRMFGNDITNISFKRNKVDLFSNGDLCQNAKISNKMDGDNWLGQADKSHQNQDSKQSSRSYQFGPFAPVYVPKVSASDNNNAKRVHDWDSLATAYRPQYQNQALRELFSHYMEAWKSWYSEVAGKRPIHIL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2933 382 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Prci4g2933 382 MobiDBLite consensus disorder prediction 126 146 - -
Prci4g2933 382 MobiDBLite consensus disorder prediction 289 312 - -
Prci4g2933 382 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Prci4g2933 382 MobiDBLite consensus disorder prediction 295 312 - -
Prci4g2933 382 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Prci4g2933 382 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Prci4g2933 382 FunFam E2F transcription factor 8 13 85 - -
Prci4g2933 382 FunFam E2F transcription factor-like E2FE 147 234 - -
Prci4g2933 382 Gene3D - 147 234 IPR036388 -
Prci4g2933 382 Gene3D - 13 86 IPR036388 -
Prci4g2933 382 MobiDBLite consensus disorder prediction 103 147 - -
Prci4g2933 382 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Prci4g2933 382 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Prci4g2933 382 PANTHER TRANSCRIPTION FACTOR E2F 11 351 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2933 Prci-Chr4 41108189 41111597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2933 13 379 E2F-DP Transcription Factor Family AT3G48160 57.951 2.88e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Prci4g2933 E2F_TDP 3.9e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2933 K09391 - qsa:O6P43_030916 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2933 4 41108189 41111597 Prci4g2933 4 41108189 41111597 ECH