Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2926 ATGGGTGGCGGCAATGGCAAGCGCAGGTGGAGAATTTCCTTCCATCGTTCTTCTTCGTCCTCTGATTCCAAGCTCGACGCAAAGCAACCCCCGAAGGAGTTTCTATGTCCAATTTCTGGGATTTTCATGTCCGACCCTGTTGTTGTCGCTTCGGGTCACACATTCGAACGTGTTGCCGTTCAAGTATGCAGAGATTTGAACTTCTCCCCCAAACTCGAAGACGGGTCGCGGCCCGATTTCTCCACAATCATTCCTAATTTGGCCATAAGAAATACCATCTCTAATTGGTGCAAAAACTCCGGCATGGAACTCCCTCGCGTGCTTGAATATAGTTCTGTCGAGAGGGTTGTACGCGTATCAATGGCGTCCCAGCAGGAATCGCCAGATTTAAGGGTTTCGGAGATGGAATTGTTGAAGGCAGTGGCGGACAACCCGCCGGTGTTTTTCTCCCACGCCGCCACTGAGTTGGGTCCTCGAGTTAACCACTTCGATTCGTGCTCGTCGGAGGAATCGGTAATCATCGTGCCCAGTCCCGGCACGCCCCTGCATCTAACCACTCGTCCAACCTGTTACTCTTCATCGTCGTCTTCTTCCGTAACCGTCGAATCGGAATTTCAAAACCCTAATGGCCCAATTTCCGAAGAAGAGGACAAATTAGTCTCGAAGCTGAGGAGCAGTGAGATTTTCGAGCAGGAAGAAGCCGTTAAATCACTGAGAAGCATCACGAGGAACAGAGAGAACACCCGAATTTCTCTCTGCACTCCCCAATTGCTCTCCGCCCTACGATCTTTGATCGCCTCGAGGTACTCCGTTGTTCAAGTAAACGCCGTCGCTTCGCTGGTCAATCTCTCCCTCGAGAAATCCAACAAGGTGAAGATCGTACGGTTGGGATTCGTCCCCTATCTCATTGACGTCTTGAAGGGGGGATCCGATGAATCGCAGGAACACGCAGCCGGTGCCCTCTTCAGCTTAGCCTTAGACGACGACAACAAAATGGCCATCGGAGTTCTCGGCGCGTTGCAGCCCCTCATGCACGCGCTGAGATCGGAGTCCGAGCGTACCCAACAGGACTCTGCACTCGCGATGTACCACCTGACATTGGTCCAAAGCAATCGGGTCAAGCTCGTAAGGCTCGGGGCAGTTCCGACCCTACTCGCGATGTTGAAATCAGGTAAATTGACGAGCCGGGTGTTGCTAATTCTTTGTAATCTAGCCGTGTGTCCGGAGGGCCAATCGGCGATGCTGGACGGGAATGCAGTAGACTGCTTAGTGAGTTTATTAAAGGAGAAAGAGTTGGACTCGGAATCGACTCGTGAGAACTGTGTTGCTGCGTTGTATGCGCTTGGCCATGGAAGCTTGAGGTTCAGGGCAGTGGCGAAGGAGGCAAGGGTTATGGAGGTGTTGAAGGAGATTGAAGAGAGTGGTACAGAGAGAGCCAGGGAGAAAGCGAAGAGGATAGTGCAGATGATGCGGGCAGGAGGAGAAGACGGCGAAGATGGAAACGGGTCGAATTTTGATTTGGACTCGGGCGGGTTGAACCGGAATCGGTTCCGGGGGAGAAATATCAACGTTGCGAACTCAACTGCATTTTAG 1593 0.5223 MGGGNGKRRWRISFHRSSSSSDSKLDAKQPPKEFLCPISGIFMSDPVVVASGHTFERVAVQVCRDLNFSPKLEDGSRPDFSTIIPNLAIRNTISNWCKNSGMELPRVLEYSSVERVVRVSMASQQESPDLRVSEMELLKAVADNPPVFFSHAATELGPRVNHFDSCSSEESVIIVPSPGTPLHLTTRPTCYSSSSSSSVTVESEFQNPNGPISEEEDKLVSKLRSSEIFEQEEAVKSLRSITRNRENTRISLCTPQLLSALRSLIASRYSVVQVNAVASLVNLSLEKSNKVKIVRLGFVPYLIDVLKGGSDESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTQQDSALAMYHLTLVQSNRVKLVRLGAVPTLLAMLKSGKLTSRVLLILCNLAVCPEGQSAMLDGNAVDCLVSLLKEKELDSESTRENCVAALYALGHGSLRFRAVAKEARVMEVLKEIEESGTERAREKAKRIVQMMRAGGEDGEDGNGSNFDLDSGGLNRNRFRGRNINVANSTAF 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2926 530 PANTHER U BOX DOMAIN-CONTAINING 24 491 - -
Prci4g2926 530 Gene3D - 213 491 IPR011989 -
Prci4g2926 530 SMART Ubox_2 33 96 IPR003613 GO:0004842|GO:0016567
Prci4g2926 530 MobiDBLite consensus disorder prediction 1 29 - -
Prci4g2926 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 103 IPR013083 -
Prci4g2926 530 Pfam Armadillo/beta-catenin-like repeat 327 366 IPR000225 GO:0005515
Prci4g2926 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 297 334 IPR000225 GO:0005515
Prci4g2926 530 Pfam U-box domain 31 99 IPR003613 GO:0004842|GO:0016567
Prci4g2926 530 ProSiteProfiles U-box domain profile. 29 103 IPR003613 GO:0004842|GO:0016567
Prci4g2926 530 FunFam RING-type E3 ubiquitin transferase 214 490 - -
Prci4g2926 530 FunFam RING-type E3 ubiquitin transferase 11 104 - -
Prci4g2926 530 SUPERFAMILY ARM repeat 217 490 IPR016024 -
Prci4g2926 530 SUPERFAMILY RING/U-box 16 105 - -
Prci4g2926 530 SMART arm_5 407 450 IPR000225 GO:0005515
Prci4g2926 530 SMART arm_5 286 326 IPR000225 GO:0005515
Prci4g2926 530 SMART arm_5 368 406 IPR000225 GO:0005515
Prci4g2926 530 SMART arm_5 327 367 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2926 Prci-Chr4 41026870 41029402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2926 3 530 U-box Gene Family AT5G65200 56.708 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2926 - - aip:107643932 665.996