Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2910 ATGGCGACGTTTGCAGGCACTACCCAGAAGTGCAAAGCCTGTGAGAAAACAGTGTATTTGGTGGATCAGCTTGCTGCTGACAACAAGGTTTACCACAAGTCTTGCTTCAGATGCCACCATTGTAAAGGTACCCTTAAGCTGAGTAGTTATAATTCCTTTGAGGGAGTTTTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGATGACGGGCAGCTTGGAAAAAAGTTTTGAAGGCATCCCAAGAACTGCTAGAGTTGACAGATTAGGTGACCAGGTCCAAACGAACAGTAAAGTTTCAAGTTTATTTGGTGGAACTCGAGAAAAGTGTGTTGCTTGCAAGAAAACAGTTTACCCAATTGAAAAGGTGGCTGTTGATGGAAGTTCTTATCATAAGGCTTGTTTCAGGTGCACCCATGGAGGTTGTGTAATCAGTCCATCGAATTATGTGGCGCACGAACATCACCTTTATTGTAGGCACCACCATATTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAGCTTGACAAGCACGAGAATGGCAATGGGGTGACTGAGAACACACCAAGTGAGTGA 576 0.4358 MATFAGTTQKCKACEKTVYLVDQLAADNKVYHKSCFRCHHCKGTLKLSSYNSFEGVLYCKPHFDQLFKMTGSLEKSFEGIPRTARVDRLGDQVQTNSKVSSLFGGTREKCVACKKTVYPIEKVAVDGSSYHKACFRCTHGGCVISPSNYVAHEHHLYCRHHHIQLFKQKGNFSQLDKHENGNGVTENTPSE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2910 191 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Prci4g2910 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Prci4g2910 191 Gene3D Cysteine Rich Protein 5 75 - -
Prci4g2910 191 Gene3D Cysteine Rich Protein 105 174 - -
Prci4g2910 191 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Prci4g2910 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Prci4g2910 191 FunFam LIM domain and actin-binding 1 5 75 - -
Prci4g2910 191 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Prci4g2910 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Prci4g2910 191 Pfam LIM domain 11 65 IPR001781 -
Prci4g2910 191 Pfam LIM domain 110 165 IPR001781 -
Prci4g2910 191 CDD LIM2_SF3 110 170 - -
Prci4g2910 191 SMART lim_4 10 62 IPR001781 -
Prci4g2910 191 SMART lim_4 109 161 IPR001781 -
Prci4g2910 191 CDD LIM1_SF3 7 68 - -
Prci4g2910 191 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 135 - -
Prci4g2910 191 PANTHER OS06G0237300 PROTEIN 4 94 - -
Prci4g2910 191 FunFam LIM domain and actin-binding 1 104 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2910 Prci-Chr4 40959426 40962944 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Prci4g2910 LIM 4.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2910 K09377 - qsa:O6P43_030905 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2910 4 40959426 40962944 Prci4g2910 4 40959426 40962944 ECH