Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2898 ATGCCCAGCGTTTTACTTGAAACTCAGCAAATAGGTGATAGCTTGAAGTACTCATCCCCTGAATCGCCTCTCTCTTCTTTCCAAGCTCCTTATTACCTCACTGTAAAAGACAACGAAGAACCATCTCCTTCATCATCAGTAAGTAAAATCAGCCCACTTATTCTGTTAGTGATAATAGTTCTAGCAGTCATCTTCTTTGTCTATGGAATCGTTCATTTGGTTCTTTGGCTTCTGACGAAAACTCCATCGTCCTCTTCACCTTTATATCATTCCAATAGATTCCCAGAATCCACGCGTTCTCGTGTGTTTCAAAGGCAGCTTCATCATCTCTTTCGCTTACATGATTCAGGATTAGAACAATCTCTCATAGACGCGCTTCCTGTTTTTTACTACGAGGATGTCTTGGGTCTGAAAGAACCCTTTGATTGTGCTGTGTGTCTGTGCGAATTCTCTGAGCAGGACAAGCTGAGACTGTTGCCAATGTGTGGCCACGCTTTTCACATCAGTTGTCTAGACACGTGGCTTCTCTCAAACACCACATGCCCTCTCTGCAGAGCGACAATCTCATCAAGTTCTGGTTTTTCCATGGAAAACCTATTATTCAATGATGAGAATTCATGGGTTTTGAATAGATTCAAAGGAGATGAAGAGAATGTCACCAGGTGTTCAGATGCTCAGAGAGTACTAGGCAGTGAAGATGGAATGATTGAAAAAAGGGTTTTTTCTGTGAGACTTGGAAAGTTCAGAAACATTAACGGAGGAGCAGAAGAGGTTGGAGAAGAAGAGGGTGGTAGTAGTAACATGGATGGAAGGAGATGCTTCTCCATGGGTTCGTATCAGTATGTGGTGAGTGGCTCAAATCTGCAAGTGGTGATGTCTGATGTTTCGGACAATGAGGAAGCTGTGGAGGGGAAGAAGATAGGAGATAGAGTTAAAGGTGAGAGCTTCTCTGTTTCGAAGATCTGGCTTTGGTCCAACAAGAGCAAGTATCGAAGTTCTTCTGATGACGCTGCTTTGCCTTGGTTACTGTAA 1032 0.4312 MPSVLLETQQIGDSLKYSSPESPLSSFQAPYYLTVKDNEEPSPSSSVSKISPLILLVIIVLAVIFFVYGIVHLVLWLLTKTPSSSSPLYHSNRFPESTRSRVFQRQLHHLFRLHDSGLEQSLIDALPVFYYEDVLGLKEPFDCAVCLCEFSEQDKLRLLPMCGHAFHISCLDTWLLSNTTCPLCRATISSSSGFSMENLLFNDENSWVLNRFKGDEENVTRCSDAQRVLGSEDGMIEKRVFSVRLGKFRNINGGAEEVGEEEGGSSNMDGRRCFSMGSYQYVVSGSNLQVVMSDVSDNEEAVEGKKIGDRVKGESFSVSKIWLWSNKSKYRSSSDDAALPWLL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2898 343 CDD RING-H2_EL5-like 142 185 - -
Prci4g2898 343 SMART ring_2 143 184 IPR001841 -
Prci4g2898 343 FunFam E3 ubiquitin-protein ligase ATL6 106 191 - -
Prci4g2898 343 Pfam Ring finger domain 142 185 IPR001841 -
Prci4g2898 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 45 322 - -
Prci4g2898 343 SUPERFAMILY RING/U-box 122 191 - -
Prci4g2898 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Prci4g2898 343 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2898 Prci-Chr4 40851458 40853237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2898 48 334 C3H Transcription Factor Family AT2G18650 41.265 1.69e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2898 - - gmx:100807741 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2898 4 40851458 40853237 Prci4g2898 4 40851458 40853237 ECH