Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2878 ATGACTCGTTACTCCAATCACGACCATCGTCGTCTTCTCTCTTCTCCAGCTGTATTCCCATGCCAAGACATCTCTCCCGCCACTCTTCTCACGTCTTTGGTTTCTCTCTCCCTCGATGTCTGTAACTTTCAATGCAGGCTCTTCCCCACTCAGCGACGGAATGCCAGAGAAGCCATACGCCAGGTCGGTATTATCCTTATCTTTCTCCAGGAACTTCCAGAAATCCCACAACAATCCCCTGTTCTCTGCTTCTCCGAGCTCCACTATAGCTTCCAGAAGATTCTGTTCTTGCTTCAAGATTGTACTCGTAAGGGTGCCAGGTTATGGATGCTCATGAAATTACAATACGTTGCCTCCCAATTTCGGGTTCTGATTCGTGGGCTTGCCACTGCTCTTGACGTATTGCCTCTGCATCGGATTGAGGTTTGTGGTGAGGTGAAGGAATTGGTGGAACTAGTAGCCAACCAAGCTCGGAAGGTGAAATTCGAAGTTGACCCTGAGGACGAAGAGAATTCAAAACTTGTTCATTCAATTTTGCGTCAGTTTGAGAAGGGAATTGAACCTGCCTTAGCTGACATTAAGCGAGTTTTAGATTATCTAGACATAAAGAGTTGGACTGATTGTAATAATGAGATCGAATTTTTACAAGATGAAATGGATTTCCAGTATTCTGAATGCGACGAGCGCGAGGTTCCGTTTCTGAGTAGTTTGATCGGATTCTTGAGCTATTGCAGAGGAGTGATATTCGAAACTCTGGATTCTCGCAACCCCTCAGATTCCTCTGAAGGAAGGTGTAGTACAGAGACGATTAAATGCATAAACCCAGAGGATTTCCGGTGCCCAATTTCGCTCGAGCTAATGAAAGATCCAGTAACTGTATCAACAGGTCAGACCTACGATCGAACTTCTATACAACAATGGCTGAAATCAGGGAACAAAATCTGCCCCAAAACAGGGGCAAAGCTAAAGAACACAGACTTAATCCCGAACACAACGCTCCGAAAGCTGATACAACAATTCTGCGTCGACAATGGCGTTTCTCTGACCAAATTAAACAATCCAGGTCGCGATATAGCGAATACCACCGTCCCGGGAAGCCCTGCAGCAGCGCACGCCACGCAGTTTCTGTCGTGGTTTCTCGCTCGGAGGCTCGTATTTGGAACAATGGACGAGAAGAACAAAGCATCATATGAGATTCGTTTGCTCGCAAGATCCAACATTTTCAACCGGTCGTGTCTGATCCAAGTGGGAACAGTGTCCCCTTTGCTCTTCCTTCTGTCCACGAGAGACAAATCGACGCAAGAGAACGCCATTGCTGCTCTGCTGAAGCTCTCAAAGCATAACAATGGCAAGGAAGCTATAATTGAAAACGGAGGCTTAAAGCCAATAGTTACGGTTCTCAAGAACGGATTAAGCCCAGAATCGCGCCAGACCGCAGCAGCTATCATATTCTATCTAGCAAAGCAACACAGAAGATTAATAGGAGAAAACGCGGAGGTAATTCCTTCTCTAGTTGAGCTGATGAAGGAAGGAACAGCATGCGGAAAGAAGAATGCCATGGTCGCGTTATTCGGGCTTCTCGTACTCGCAAGTAACCATAAAAGAGTACTTGAAGCCAATACTGTTCCGGTGCTTGTTGATATCTTAGCTTCCTCAGAGAAGGATGACGTGACGACAGATTCGTTAGCAGTTCTTGCGGCTCTAGCAGAGAACAGTGAAGGAGCAGAAGCTATGCTGAAAGTGTCGGCCCTGCCTTTGATCACAGGGATAATGAAATCGACAACGAGGAAAGTAGGGAAAGAACACTGCGTTTCGATTCTTCTATCTCTGTGCGTGAACGGAGGAGAAGATGTGATCGGTTTGATGGCGAAGGACGTGTCGATAATGGCTTCCTTGTATTCGCTTCTCACGGATGGGACCAGTCGAGCGGCAAAGAAAGCTCGCTTTCTCATGAGGATTTTACAGCAATTTAACGAGAAACCAACTTCTTCGGTTGCTCCACAGCAAACACTTGACGTTATTGATTTGTTAGGTAGAAATTGA 2043 0.4621 MTRYSNHDHRRLLSSPAVFPCQDISPATLLTSLVSLSLDVCNFQCRLFPTQRRNAREAIRQVGIILIFLQELPEIPQQSPVLCFSELHYSFQKILFLLQDCTRKGARLWMLMKLQYVASQFRVLIRGLATALDVLPLHRIEVCGEVKELVELVANQARKVKFEVDPEDEENSKLVHSILRQFEKGIEPALADIKRVLDYLDIKSWTDCNNEIEFLQDEMDFQYSECDEREVPFLSSLIGFLSYCRGVIFETLDSRNPSDSSEGRCSTETIKCINPEDFRCPISLELMKDPVTVSTGQTYDRTSIQQWLKSGNKICPKTGAKLKNTDLIPNTTLRKLIQQFCVDNGVSLTKLNNPGRDIANTTVPGSPAAAHATQFLSWFLARRLVFGTMDEKNKASYEIRLLARSNIFNRSCLIQVGTVSPLLFLLSTRDKSTQENAIAALLKLSKHNNGKEAIIENGGLKPIVTVLKNGLSPESRQTAAAIIFYLAKQHRRLIGENAEVIPSLVELMKEGTACGKKNAMVALFGLLVLASNHKRVLEANTVPVLVDILASSEKDDVTTDSLAVLAALAENSEGAEAMLKVSALPLITGIMKSTTRKVGKEHCVSILLSLCVNGGEDVIGLMAKDVSIMASLYSLLTDGTSRAAKKARFLMRILQQFNEKPTSSVAPQQTLDVIDLLGRN 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2878 680 PANTHER U BOX DOMAIN-CONTAINING 64 654 - -
Prci4g2878 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 583 IPR000225 GO:0005515
Prci4g2878 680 Gene3D - 388 519 IPR011989 -
Prci4g2878 680 Gene3D - 520 666 IPR011989 -
Prci4g2878 680 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Prci4g2878 680 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Prci4g2878 680 SUPERFAMILY ARM repeat 392 655 IPR016024 -
Prci4g2878 680 CDD RING-Ubox_PUB 275 327 IPR045210 -
Prci4g2878 680 SUPERFAMILY RING/U-box 274 348 - -
Prci4g2878 680 SMART arm_5 447 488 IPR000225 GO:0005515
Prci4g2878 680 SMART arm_5 571 612 IPR000225 GO:0005515
Prci4g2878 680 SMART arm_5 529 570 IPR000225 GO:0005515
Prci4g2878 680 SMART arm_5 405 446 IPR000225 GO:0005515
Prci4g2878 680 FunFam RING-type E3 ubiquitin transferase 274 346 - -
Prci4g2878 680 Pfam U-box domain 275 342 IPR003613 GO:0004842|GO:0016567
Prci4g2878 680 FunFam RING-type E3 ubiquitin transferase 355 665 - -
Prci4g2878 680 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Prci4g2878 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 348 IPR013083 -
Prci4g2878 680 Pfam Armadillo/beta-catenin-like repeat 409 445 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2878 Prci-Chr4 40769432 40771762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2878 10 667 U-box Gene Family AT1G60190 40.356 3.62e-161 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2878 - - qsa:O6P43_022729 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2878 4 40769432 40771762 Prci4g2878 4 40769432 40771762 ECH