Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2855 ATGGATTTGGATACAAAGATCAGACAACAATATGTTTCCCAGCCAATGCAGATGCCAGCAATGGACGTGAAATCCAACGTAAAAGATCTCCAGCTTCCTAATTTTGGGGCTCCTTCATCACAGAGTAATTTCTTGCAAGATCTACTCCATATTGATCCATTTCAAGTATATGGATCTTCATCAAATTCAGTTATTGGGGTCCAAACTGCAAATTTTGTTAGCCCTTTAGATAGTTTCTCCGTTGGCTGTTCATCAGAAGATTTTGATGTTTATGAGTCAAAACCATTTATTGAAAATATCAATGGCAATGAAGGGCATGCACATGTTATGGAGAATTTCCAGTTCGGAGGTAATAATTATTATAGCCTCAATGTCTCTCATGAGAGGAATCAAATGGAGGTGGTGGATGCAGACCAGAGCAATTATTATTTTCCATTTGACTCTCAAGAAAGCAAGCCTATCAAATTCGTAGTACCAGATGATGAAGTCTCTGTCATATCTTCAGATCTTAGTTTTCTCCGGAGGGTTGGTTTGAGTAATAGGAATAGCAGGTTATCAGCTTCAATCAGAAGGGCATGCAAAGTTCGGAACAAGTCCAACGTGGTGAAGGGACAGTGGACAGTGGAAGAAGATAGGCTGCTGATTCAGCTGGTTGAAAAGTACGGAGTGAGAAAGTGGTCTCATATTGCTCAGAGTTTGCCTGGGAGAATAGGCAAACAATGTCGAGAGCGTTGGCATAATCATTTAAGGCCTAACATCAAGGTTCTAATTTGTCTGAGTCTGTTATGCCAAAAGGACACGTGGAGTAATGAAGAGGATAAGATCCTGATCGAAGCCCACATAGAGATAGGAAATAAATGGGCAGAGATTGCCAAGAAGTTGCCTGGAAGAACTGAAAACTCCATAAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCAAAAAGGAAGTGTCGCTCCAAGTACCCTAAACCCTCTCTTCTTCAGGAATACATCAAGAGCTTGAACTTAGACAAAAACCCGCCTATAGATTATAGGAAGAGATCCTCTTCTTCTGCTAACCCTAACAACAACAACAACAATCGTATGACTGGTACAAGGAAAGCATCAGCAAGACTGGCAAGTGAGCAGTTTTGTCCCGACAATGACAGATTGGTTCCTACATATGACTTTAACGACGTCCCAGACTTTTGTTTCGATGAGAACATAAATTTGTTTCAAGAAGTATGCAATCTTGATACTTTACTTGATGATATGCCTTGTGCTCCTGATCATACTGTGCACGGAGGAGACTTTGAAGCAAAGTTGCAATATTGTGACGATGTTGTTAATAATGCTGATTTTGATGAGGATGATCAGTTTGATTTAGGGAAGTCACAGGGTCAGGAGGTGGAACTTAAGAAGGAGATGGATTTGGTGGAGATGATGTCTCAGATCAAAGATGTTCTTGGTTGTGTTTAG 1464 0.4044 MDLDTKIRQQYVSQPMQMPAMDVKSNVKDLQLPNFGAPSSQSNFLQDLLHIDPFQVYGSSSNSVIGVQTANFVSPLDSFSVGCSSEDFDVYESKPFIENINGNEGHAHVMENFQFGGNNYYSLNVSHERNQMEVVDADQSNYYFPFDSQESKPIKFVVPDDEVSVISSDLSFLRRVGLSNRNSRLSASIRRACKVRNKSNVVKGQWTVEEDRLLIQLVEKYGVRKWSHIAQSLPGRIGKQCRERWHNHLRPNIKVLICLSLLCQKDTWSNEEDKILIEAHIEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPKPSLLQEYIKSLNLDKNPPIDYRKRSSSSANPNNNNNNRMTGTRKASARLASEQFCPDNDRLVPTYDFNDVPDFCFDENINLFQEVCNLDTLLDDMPCAPDHTVHGGDFEAKLQYCDDVVNNADFDEDDQFDLGKSQGQEVELKKEMDLVEMMSQIKDVLGCV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2855 487 CDD SANT 206 249 IPR001005 -
Prci4g2855 487 Pfam Myb-like DNA-binding domain 266 307 IPR001005 -
Prci4g2855 487 Pfam Myb-like DNA-binding domain 203 249 IPR001005 -
Prci4g2855 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 253 IPR017930 -
Prci4g2855 487 PANTHER MYB PROTEIN-RELATED 180 362 - -
Prci4g2855 487 FunFam Transcriptional activator Myb isoform A 202 254 - -
Prci4g2855 487 ProSiteProfiles Myb-like domain profile. 264 310 IPR001005 -
Prci4g2855 487 CDD SANT 267 310 IPR001005 -
Prci4g2855 487 Gene3D - 202 254 - -
Prci4g2855 487 SUPERFAMILY Homeodomain-like 200 306 IPR009057 -
Prci4g2855 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 263 314 IPR017930 -
Prci4g2855 487 MobiDBLite consensus disorder prediction 347 372 - -
Prci4g2855 487 Gene3D - 267 332 - -
Prci4g2855 487 ProSiteProfiles Myb-like domain profile. 198 249 IPR001005 -
Prci4g2855 487 MobiDBLite consensus disorder prediction 301 322 - -
Prci4g2855 487 SMART sant 202 251 IPR001005 -
Prci4g2855 487 SMART sant 264 312 IPR001005 -
Prci4g2855 487 FunFam Transcription factor MYB119 266 330 - -
Prci4g2855 487 MobiDBLite consensus disorder prediction 340 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2855 Prci-Chr4 40525644 40529952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2855 83 430 MYB Transcription Factor Family AT4G18770 47.956 2.44e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci4g2855 Myb_DNA-binding 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2855 K09422 - gmx:102662267 468.388