Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2845 ATGGAGAACCCGTTTGAGTTCCATTCTATCGCCGGTTACTCTGAGCAGTCACCAATGGCTCCATCATTGCAACCAACTGGTTTCCAGGAGGAATTGACGGCACAGTCACACCACGTGGTTCCGCTTAGCGGGACATCGTCAATCGGACAGGAGCAATTAGCCTGGTCCTGTTCTCCTTCATCGGCGCCAATATCCGATGCTCCGTCGTCAGTGATGGCGGAGGTTCAGAGAGTGGAAGCCGGATTGGAGGAGGATGTTTCTAAGAAGCTTCGCGCTAAAATCTTCTTTCATCCTTTGTATCCTAAACTCCTGGACGCCTATGTCGAGTGCCAAAAGGTTGGAGCGCCGCCGGCGATAGCAAAACTGTTAGACGAAATCGGACGAGAGAATGGCGAACTAAGTCAGAGGTCTACTTACGTGGGTGCCGATCCCGAGCTCGATGAGTTTATGGAAACGTATTGCGATATATTGGTGAGGTACAAATCGGATCTCTCGAAGCCTTTTGACGAAGCCACCGTGTTTCTAAACGACATGGAGATGCAGCTTAACTCCCTCTGCAACGGCCATTCGCGAAGCAACAGTTCTGTTGATGGTTCCGGATCATCCGAGGATGACAGTAGGGAAGAGAGAGAAGAAAATGAGTGTAAGAGAGACACTGAAGGTCGAGAGCTGAAGGACAAACTTCTTCGTCGATATAGTGGATATATTATTGGTCTAAAGCATGAGTTTTCAAAAAAAAAGAAGAAAGAAAAGCTACCCAAAGAAGCGAGACAAATTTTACTTGCATGGTGGAATATTCACTTCAAGTGGCCATACCCAACGGAAGCGGATAAGGTTGCATTAGCTGAATGGACAGGTCTGGATCACAAGCAGATCAACAATTGGTTTATCAACCAAAGGAAGCGACACTGGAAGCCAACGGAGGAAATGCAAGCTGCTGTTTTTGACGGCCTCTATGGACCTTTTTCCACGAGTGATTGA 981 0.4771 MENPFEFHSIAGYSEQSPMAPSLQPTGFQEELTAQSHHVVPLSGTSSIGQEQLAWSCSPSSAPISDAPSSVMAEVQRVEAGLEEDVSKKLRAKIFFHPLYPKLLDAYVECQKVGAPPAIAKLLDEIGRENGELSQRSTYVGADPELDEFMETYCDILVRYKSDLSKPFDEATVFLNDMEMQLNSLCNGHSRSNSSVDGSGSSEDDSREEREENECKRDTEGRELKDKLLRRYSGYIIGLKHEFSKKKKKEKLPKEARQILLAWWNIHFKWPYPTEADKVALAEWTGLDHKQINNWFINQRKRHWKPTEEMQAAVFDGLYGPFSTSD 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2845 326 MobiDBLite consensus disorder prediction 186 200 - -
Prci4g2845 326 ProSiteProfiles ELK domain profile. 223 243 IPR005539 GO:0003677
Prci4g2845 326 SMART KNOX1_2 88 132 IPR005540 GO:0003677|GO:0005634
Prci4g2845 326 SUPERFAMILY Homeodomain-like 244 318 IPR009057 -
Prci4g2845 326 SMART KNOX2_2 136 187 IPR005541 GO:0003677|GO:0005634
Prci4g2845 326 Pfam ELK domain 223 244 IPR005539 GO:0003677
Prci4g2845 326 MobiDBLite consensus disorder prediction 201 220 - -
Prci4g2845 326 MobiDBLite consensus disorder prediction 186 220 - -
Prci4g2845 326 SMART ELK_2 223 244 IPR005539 GO:0003677
Prci4g2845 326 Gene3D - 241 314 - -
Prci4g2845 326 Pfam KNOX2 domain 140 186 IPR005541 GO:0003677|GO:0005634
Prci4g2845 326 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 95 312 - -
Prci4g2845 326 ProSiteProfiles 'Homeobox' domain profile. 243 306 IPR001356 GO:0003677
Prci4g2845 326 ProSitePatterns 'Homeobox' domain signature. 281 304 IPR017970 GO:0000981|GO:0006355
Prci4g2845 326 CDD homeodomain 257 306 IPR001356 GO:0003677
Prci4g2845 326 Pfam Homeobox KN domain 263 302 IPR008422 GO:0003677|GO:0006355
Prci4g2845 326 Pfam KNOX1 domain 90 130 IPR005540 GO:0003677|GO:0005634
Prci4g2845 326 SMART HOX_1 245 310 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2845 Prci-Chr4 40445182 40461953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2845 1 324 Homeobox Transcription Factor Family AT1G23380 50.296 1.92e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci4g2845 KNOX2 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2845 - - qsa:O6P43_022694 361.688