Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2844 ATGGAGAACCCGTTTGAGTTCCATTCTATCGCCGGTTACTCTGAGCAGTCACCAATGGCTCCATCATTGCAACCAACTGGTTTCCAGGAGGAATTGACGGCACAGTCACACCACGTGGTTCCGCTTAGCGGGACATCGTCAATCGGACAGGAGCAATTAGCCTGGTCCTGTTCTCCTTCATCGGCGCCAATATCCGATGCTCCGTCGTCAGTGATGGCGGAGGTTCAGAGAGTGGAAGCCGGATTGGAGGAGGATGTTTCTAAGAAGCTTCGCGCTAAAATCTTCTTTCATCCTTTGTATCCTAAACTCCTGGACGCCTATGTCGAGTGCCAAAAGGTTGGAGCGCCGCCGGCGATAGCAAAACTGTTAGACGAAATCGGACGAGAGAATGGCGAACTAAGTCAGAGGTCTACTTACGTGGGTGCCGATCCCGAGCTCGATGAGTTTATGGAAACGTATTGCGATATATTGGTGAGGTACAAATCGGATCTCTCGAAGCCTTTTGACGAAGCCACCGTGTTTCTAAACGACATGGAGATGCAGCTTAACTCCCTCTGCAACGGCCATTCGCGAAGCAACATTGATGGTTCCGGATCATCCGAGGATGACAGTAGGGAAGAGAGAGAAGAAAATGAGTGTAAGAGAGACACTGAAGGTCGAGAGCTGAAGGACAAACTTCTTCGTCGATATAGTGGATATATTATTGGTCTAAAGCATGAGTTTTCAAAAAAAAAGAAGAAAGAAAAGCTACCCAAAGAAGCGAGACAAATTTTACTTGCATGGTGGAATATTCACTTCAAGTGGCCATACCCAACGGAAGCGGATAAGGTTGCATTAGCTGAATGGACAGGTCTGGATCACAAGCAGATCAACAATTGGTTTATCAACCAAAGGAAGCGACACTGGAAGCCAACGGAGGAAATGCAAGCTGCTGTTTTTGACGGCCTCTATGGACCTTTTTCCACGAGTGATTGA 975 0.4769 MENPFEFHSIAGYSEQSPMAPSLQPTGFQEELTAQSHHVVPLSGTSSIGQEQLAWSCSPSSAPISDAPSSVMAEVQRVEAGLEEDVSKKLRAKIFFHPLYPKLLDAYVECQKVGAPPAIAKLLDEIGRENGELSQRSTYVGADPELDEFMETYCDILVRYKSDLSKPFDEATVFLNDMEMQLNSLCNGHSRSNIDGSGSSEDDSREEREENECKRDTEGRELKDKLLRRYSGYIIGLKHEFSKKKKKEKLPKEARQILLAWWNIHFKWPYPTEADKVALAEWTGLDHKQINNWFINQRKRHWKPTEEMQAAVFDGLYGPFSTSD 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2844 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 310 - -
Prci4g2844 324 Pfam KNOX1 domain 90 130 IPR005540 GO:0003677|GO:0005634
Prci4g2844 324 SMART KNOX1_2 88 132 IPR005540 GO:0003677|GO:0005634
Prci4g2844 324 SMART KNOX2_2 136 187 IPR005541 GO:0003677|GO:0005634
Prci4g2844 324 CDD homeodomain 255 304 IPR001356 GO:0003677
Prci4g2844 324 SUPERFAMILY Homeodomain-like 242 316 IPR009057 -
Prci4g2844 324 Pfam KNOX2 domain 140 186 IPR005541 GO:0003677|GO:0005634
Prci4g2844 324 ProSiteProfiles ELK domain profile. 221 241 IPR005539 GO:0003677
Prci4g2844 324 SMART ELK_2 221 242 IPR005539 GO:0003677
Prci4g2844 324 Pfam ELK domain 221 242 IPR005539 GO:0003677
Prci4g2844 324 Gene3D - 239 312 - -
Prci4g2844 324 Pfam Homeobox KN domain 261 300 IPR008422 GO:0003677|GO:0006355
Prci4g2844 324 SMART HOX_1 243 308 IPR001356 GO:0003677
Prci4g2844 324 MobiDBLite consensus disorder prediction 196 218 - -
Prci4g2844 324 ProSiteProfiles 'Homeobox' domain profile. 241 304 IPR001356 GO:0003677
Prci4g2844 324 ProSitePatterns 'Homeobox' domain signature. 279 302 IPR017970 GO:0000981|GO:0006355
Prci4g2844 324 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2844 Prci-Chr4 40445182 40461953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2844 1 322 Homeobox Transcription Factor Family AT1G23380 48.817 1.06e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci4g2844 KNOX2 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2844 - - qsa:O6P43_022694 366.311