Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2806 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAGCTGAGGAAGGGCCTGTGGTCCCCTGAAGAAGATGAGAAGCTCTTCAATTACATTACCAGATATGGCGTTGGCTGCTGGAGTTCTGTTCCCAAACTCGCTGGATTACAAAGATGTGGAAAGAGTTGCAGACTGAGATGGATTAATTATCTGAGGCCTGATTTGAAGAGAGGAATGTTTTCTCAGCAAGAGGAAGATCTCATAATCAGTCTTCATGAAGTACTTGGCAACAGGTGGGCTCAGATTGCATCACAGTTACCAGGAAGAACAGACAACGAGATAAAGAACTTCTGGAACTCAAGTCTGAAGAAGAAGCTGCTGAAGCAAGGGATTGACCCAACCACACACAAGCCTCTAATTATTACAGAACCTTATCAATCAACCATAAAGGAGGAGAAGAAAAGTCTCACAGATCATTCAGAAACTCTATTACCATCTATGCAGATTCCGTTCTCAGTCTCAGCTCCATCGACCTCCTTAGGCTTCTCATCATCATCATCACAAGGATCAGCACTTGCAGGAAGTGATAATTCGAACCAATTCGAGAATAACGGTTACGACCCGTTGGCCTTATTTGAGTTCCAAATGGGCGGTTTAAACCAGTCTGAGTTCGGATTCAATATGTGCTCAATAATGCCACCAGGTCTGATCACCAATTACATGGCGGATCAGTTGCCATCGGATAACAATTCGGGTTCGCGAATCATTTCGAGCAATAGCTTGAGCAGCTATTTTCAAGGAGGAGGGTGTCAGATGATCAGTAATAACGGCTTGATGATGGATCCATTAATGTATCAGTTTCAAGTGAATGGGATGAAGAACGAAGAAGATTATCATCAGTTGATGATGAAGACGACAGGGTCGTCGTCGTGGGAAGAAGATGGCCAGATTCTGAATCAAACCTCCGTGGATTTCACCGCCACCTATCCGTTAACGTCACTGTCAGAAGATCTAACGCCCGCGAATTTTGATGCTTTCCACCATATGTGA 1020 0.4422 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRYGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIASQLPGRTDNEIKNFWNSSLKKKLLKQGIDPTTHKPLIITEPYQSTIKEEKKSLTDHSETLLPSMQIPFSVSAPSTSLGFSSSSSQGSALAGSDNSNQFENNGYDPLALFEFQMGGLNQSEFGFNMCSIMPPGLITNYMADQLPSDNNSGSRIISSNSLSSYFQGGGCQMISNNGLMMDPLMYQFQVNGMKNEEDYHQLMMKTTGSSSWEEDGQILNQTSVDFTATYPLTSLSEDLTPANFDAFHHM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2806 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Prci4g2806 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci4g2806 339 PANTHER MYB DOMAIN PROTEIN 55 1 253 - -
Prci4g2806 339 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Prci4g2806 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci4g2806 339 SMART sant 13 63 IPR001005 -
Prci4g2806 339 SMART sant 66 114 IPR001005 -
Prci4g2806 339 Gene3D - 11 67 - -
Prci4g2806 339 FunFam MYB transcription factor 11 67 - -
Prci4g2806 339 CDD SANT 17 61 IPR001005 -
Prci4g2806 339 CDD SANT 70 112 IPR001005 -
Prci4g2806 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci4g2806 339 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci4g2806 339 FunFam Transcription factor MYB86 69 138 - -
Prci4g2806 339 Gene3D - 69 150 - -
Prci4g2806 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2806 Prci-Chr4 40131764 40133406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2806 1 245 MYB Transcription Factor Family AT1G09540 51.119 5.91e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci4g2806 Myb_DNA-binding 4.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2806 K09422 - gmx:100811140 337.421