Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2804 ATGACGACGAGATTTAAGAAGAACAGAAAGAAGAGAGGGCATGTGAGCGCTGGACATGGCCGTATCGGGAAGCACAGGAAGCATCCGGGAGGTCGAGGTAACGCCGGCGGTATGCACCACCACCGAATTCTCTTCGATAAATACCATCCTGGTTATTTCGGTAAGGTTGGTATGCGATACTTTCACAAGCTTCGCAACAAATTCTACTGCCCCATTGTCAACATCGACAAGCTCTGGTCCCTTCTTCCCCAAGAAGCGAAGGATAAGGCTTCCAAGGATAACGCCCCTTTGATTGACGTCACTCAATTTGGGTACTTCAAGGTGTTGGGCAAAGGGGTTTTGCCTGACAACAAACCCGTCGTCGTGAAGGCCAAGCTCGTGTCCAAGATTGCTGAGAAGAAGATCAAGGAGGCCGGAGGAGCTGTTGTCCTCACTGCTTAA 441 0.5034 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLLPQEAKDKASKDNAPLIDVTQFGYFKVLGKGVLPDNKPVVVKAKLVSKIAEKKIKEAGGAVVLTA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2804 146 Hamap 50S ribosomal protein L15 [rplO]. 1 145 IPR030878 GO:0003735|GO:0006412|GO:0015934
Prci4g2804 146 Gene3D - 58 146 - -
Prci4g2804 146 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 IPR021131 -
Prci4g2804 146 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 146 - -
Prci4g2804 146 ProSitePatterns Ribosomal protein L15 signature. 107 139 IPR001196 GO:0003735|GO:0005840|GO:0006412
Prci4g2804 146 SUPERFAMILY Ribosomal proteins L15p and L18e 6 145 IPR036227 -
Prci4g2804 146 MobiDBLite consensus disorder prediction 1 35 - -
Prci4g2804 146 FunFam 60S ribosomal protein L27a 58 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2804 Prci-Chr4 40103884 40104669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2804 1 146 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 88.356 1.28e-94 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2804 K02900 - csv:101221117 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2804 4 40103884 40104669 Prci9g1735 9 29401249 29401927 CCT
Prci4g2804 4 40103884 40104669 Prci9g1735 9 29401249 29401927 ECH
Prci4g2804 4 40103884 40104669 Prci4g2804 4 40103884 40104669 ECH