Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2803 ATGAATCCTTACGACAACAGATATACTGACTCGACTTCTTATCGCAACCGCAGGAGTGATTTAGTTGGATCTATGGCGCCGATGGTCCCTCCAGTGATTGGGGGTGCCAGCTCGAGCTACAGCCGCGGAGGTCCTGCTCCTCATGTTCCTCCACCGGTTGGTTATAATATGGGTGGAAGAGGAGCTGGGGGTGCTTTTGGAACGGCACCTGTTGCCCCAAATTATAATGAGTTGCCGCCGTTTATGCCACCTCCTGGAGGCTTTGACATAGGTCGCGGAGGTGGGACTAGCCAAAGAGGATTCGGTGGTAGACACGGAAACGGTTATGTTGGTGATAGAAAAGATGACATAGGTCGTCGCGGGGGTGGAAGAGATCGGGGCAGCAGTTTGATGGGAGGCCGGGGAGGTGGTAGATTTGGTGGGTCTCACGGGGATAAGACTTGGGGGAGAGGTGGGGCTGGAGCTAGAGGATTCGGTGGAGCCGCTGGATTGGGTGGTGGCCGTGGCCGTGGCCGTGGTGATGGTGGCGGAGGGAGAGGAGGAAGACATGGTGGATCTTCCAAGGATGACTTGGACAACATAGCACTTCCCAAGCAAGATTTTAGAAATTTGGTTCCCTTTGAGAAGAATTTTTACATTGAAAGCCCATCGGTACGGGCAATGTCTGATCATGAGCTTATGGTTTACCGTGCCACTAGGGAGATCACAGTGCAAGGGCAAGACATTCCTAAACCAATTCGAACGTTTCAAGATGCAAACTTTCCTGATTACTGCCTTGAGGTGATTGCCAAATTGGGTTTTGTGGAGCCTACACCAATTCAGGCTCAAGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTGATTGGCATTGCTGAGACTGGCTCAGGAAAAACACTCGCATATCTGCTTCCTTCTTTAGTGCACATCAGCGCACAACCTCGATTGGTACAAGGTGAAGGTCCCATTGTCTTAGTTCTGGCACCCACTAGAGAGTTAGCGGTTCAAATTCAGGAAGAAGCTTTAAAATTTGGTTCTCGAACAAATATTAGAAGTACTTGTATCTATGGTGGTGCCCCAAAGGGGCCTCAAATTCGTGATCTTAAAAGAGGTGTTGAAATCGTTATTGCTACACCTGGTCGGCTAATAGATATGTTGGAAGCTCAGCACACAAATCTGCGAAGAGTGACTTACCTTGTGTTGGATGAAGCTGATAGAATGCTGGACATGGGCTTTGAACCTCAGATAAGAAAAATTGTTGGGCAGATCCGGCCTGATAGACAGACATTGTACTGGAGTGCAACATGGCCCAGAGAGGTTGAAACTCTGGCAAGGCAGTTTCTACGCAACCCATATAAGGTAATTATTGGATCATCAGATCTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGAGGTGGAGAAATACAATAGATTGATCAGATTGCTTAAAGAAATGATGGATGGAAGTCGAATTCTTATATTCATTGAGACAAAAAAGGGTTGTGATCAAGTTACAAGACAATTGAGAATGGATGGCTGGCCTGCACTTTCTATCCATGGTGATAAAAACCAGGCCGAAAGGGACTGGGTGTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCTCGGGGTCTTGATGTGAAGGACATAAAATGTGTGATCAATTATGATTTCCCCTCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACCGGTCGTGCAGGGGCTAAAGGAACTGCCTTCACCTTTTTCACGCATGCAAATGTCAAGTTTGCCAGGGATTTGATCAAGATCTTGCAAGATGCTGGCCAGATTGTGAGTCCTGCTCTATCTGCCTTGTCTCGGTCAGCCAGTTCTGGTCAATTTGGATCTGGGGGAAACTTCCGCTCCAGGGGACGGGGAGGTTATGGTAATAGAGGTCACATGTCAGGATCTAATTCCATTCCTCTGGGTTCAAGGAAGCCTTGGTAG 2007 0.4763 MNPYDNRYTDSTSYRNRRSDLVGSMAPMVPPVIGGASSSYSRGGPAPHVPPPVGYNMGGRGAGGAFGTAPVAPNYNELPPFMPPPGGFDIGRGGGTSQRGFGGRHGNGYVGDRKDDIGRRGGGRDRGSSLMGGRGGGRFGGSHGDKTWGRGGAGARGFGGAAGLGGGRGRGRGDGGGGRGGRHGGSSKDDLDNIALPKQDFRNLVPFEKNFYIESPSVRAMSDHELMVYRATREITVQGQDIPKPIRTFQDANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPSLVHISAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRTNIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSSDLKANQSINQVVEVVTEVEKYNRLIRLLKEMMDGSRILIFIETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHANVKFARDLIKILQDAGQIVSPALSALSRSASSGQFGSGGNFRSRGRGGYGNRGHMSGSNSIPLGSRKPW 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2803 668 FunFam probable ATP-dependent RNA helicase DDX17 209 456 - -
Prci4g2803 668 Pfam DEAD/DEAH box helicase 271 442 IPR011545 GO:0003676|GO:0005524
Prci4g2803 668 Gene3D - 453 629 IPR027417 -
Prci4g2803 668 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 399 407 IPR000629 -
Prci4g2803 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 607 IPR027417 -
Prci4g2803 668 SMART helicmild6 506 587 IPR001650 -
Prci4g2803 668 CDD SF2_C_DEAD 466 596 - -
Prci4g2803 668 FunFam ATP-dependent RNA helicase RhlB 457 630 - -
Prci4g2803 668 SMART ultradead3 266 469 IPR014001 -
Prci4g2803 668 MobiDBLite consensus disorder prediction 108 123 - -
Prci4g2803 668 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 226 625 - -
Prci4g2803 668 MobiDBLite consensus disorder prediction 100 193 - -
Prci4g2803 668 Pfam Helicase conserved C-terminal domain 477 587 IPR001650 -
Prci4g2803 668 CDD DEADc_DDX5_DDX17 259 453 - -
Prci4g2803 668 Gene3D - 210 452 IPR027417 -
Prci4g2803 668 MobiDBLite consensus disorder prediction 628 668 - -
Prci4g2803 668 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 247 275 IPR014014 GO:0003724
Prci4g2803 668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 481 626 IPR001650 -
Prci4g2803 668 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 278 453 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2803 Prci-Chr4 40093595 40098223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2803 244 607 Eukaryotic Initiation Factors Gene Family AT3G19760 35.989 5.60e-71 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2803 K12823 - qsu:112035669 899.427