Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2802 ATGAATCCTTACGACAACAGATATACTGACTCGACTTCTTATCGCAACCGCAGGAGTGATTTAGTTGGATCTATGGCGCCGATGGTCCCTCCAGTGATTGGGGGTGCCAGCTCGAGCTACAGCCGCGGAGGTCCTGCTCCTCATGTTCCTCCACCGGTTGGTTATAATATGGGTGGAAGAGGAGCTGGGGGTGCTTTTGGAACGGCACCTGTTGCCCCAAATTATAATGAGTTGCCGCCGTTTATGCCACCTCCTGGAGGCTTTGACATAGGTCGCGGAGGTGGGACTAGCCAAAGAGGATTCGGTGGTAGACACGGAAACGGTTATGTTGGTGATAGAAAAGATGACATAGGTCGTCGCGGGGGTGGAAGAGATCGGGGCAGCAGTTTGATGGGAGGCCGGGGAGGTGGTAGATTTGGTGGGTCTCACGGGGATAAGACTTGGGGGAGAGGTGGGGCTGGAGCTAGAGGATTCGGTGGAGCCGCTGGATTGGGTGGTGGCCGTGGCCGTGGCCGTGGTGATGGTGGCGGAGGGAGAGGAGGAAGACATGGTGGATCTTCCAAGGATGACTTGGACAACATAGCACTTCCCAAGCAAGATTTTAGAAATTTGGTTCCCTTTGAGAAGAATTTTTACATTGAAAGCCCATCGGTACGGGCAATGTCTGATCATGAGCTTATGGTTTACCGTGCCACTAGGGAGATCACAGTGCAAGGGCAAGACATTCCTAAACCAATTCGAACGTTTCAAGATGCAAACTTTCCTGATTACTGCCTTGAGGTGATTGCCAAATTGGGTTTTGTGGAGCCTACACCAATTCAGGCTCAAGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTGATTGGCATTGCTGAGACTGGCTCAGGAAAAACACTCGCATATCTGCTTCCTTCTTTAGTGCACATCAGCGCACAACCTCGATTGGTACAAGGTGAAGGTCCCATTGTCTTAGTTCTGGCACCCACTAGAGAGTTAGCGGTTCAAATTCAGGAAGAAGCTTTAAAATTTGGTTCTCGAACAAATATTAGAAGTACTTGTATCTATGGTGGTGCCCCAAAGGGGCCTCAAATTCGTGATCTTAAAAGAGGTGTTGAAATCGTTATTGCTACACCTGGTCGGCTAATAGATATGTTGGAAGCTCAGCACACAAATCTGCGAAGAGTGACTTACCTTGTGTTGGATGAAGCTGATAGAATGCTGGACATGGGCTTTGAACCTCAGATAAGAAAAATTGTTGGGCAGATCCGGCCTGATAGACAGACATTGTACTGGAGTGCAACATGGCCCAGAGAGGTTGAAACTCTGGCAAGGCAGTTTCTACGCAACCCATATAAGGTAATTATTGGATCATCAGATCTGAAAGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGAGGTGGAGAAATACAATAGATTGATCAGATTGCTTAAAGAAATGATGGATGGAAGTCGAATTCTTATATTCATTGAGACAAAAAAGGGTTGTGATCAAGTTACAAGACAATTGAGAATGGATGGCTGGCCTGCACTTTCTATCCATGGTGATAAAAACCAGGCCGAAAGGGACTGGGTGTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCTCGGGGTCTTGGTAGGATCACTGTGTGTTAG 1689 0.4754 MNPYDNRYTDSTSYRNRRSDLVGSMAPMVPPVIGGASSSYSRGGPAPHVPPPVGYNMGGRGAGGAFGTAPVAPNYNELPPFMPPPGGFDIGRGGGTSQRGFGGRHGNGYVGDRKDDIGRRGGGRDRGSSLMGGRGGGRFGGSHGDKTWGRGGAGARGFGGAAGLGGGRGRGRGDGGGGRGGRHGGSSKDDLDNIALPKQDFRNLVPFEKNFYIESPSVRAMSDHELMVYRATREITVQGQDIPKPIRTFQDANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPSLVHISAQPRLVQGEGPIVLVLAPTRELAVQIQEEALKFGSRTNIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSSDLKANQSINQVVEVVTEVEKYNRLIRLLKEMMDGSRILIFIETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLGRITVC 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2802 562 FunFam probable ATP-dependent RNA helicase DDX17 209 456 - -
Prci4g2802 562 Gene3D - 460 557 IPR027417 -
Prci4g2802 562 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 399 407 IPR000629 -
Prci4g2802 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 481 562 IPR001650 -
Prci4g2802 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 556 IPR027417 -
Prci4g2802 562 SMART ultradead3 266 469 IPR014001 -
Prci4g2802 562 MobiDBLite consensus disorder prediction 108 123 - -
Prci4g2802 562 Pfam DEAD/DEAH box helicase 271 442 IPR011545 GO:0003676|GO:0005524
Prci4g2802 562 CDD SF2_C_DEAD 466 556 - -
Prci4g2802 562 MobiDBLite consensus disorder prediction 100 193 - -
Prci4g2802 562 CDD DEADc_DDX5_DDX17 259 453 - -
Prci4g2802 562 Pfam Helicase conserved C-terminal domain 477 556 IPR001650 -
Prci4g2802 562 Gene3D - 220 459 IPR027417 -
Prci4g2802 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 247 275 IPR014014 GO:0003724
Prci4g2802 562 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 224 556 - -
Prci4g2802 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 278 453 IPR014001 -
Prci4g2802 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 455 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2802 Prci-Chr4 40093590 40097619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2802 244 556 Eukaryotic Initiation Factors Gene Family AT3G19760 33.866 1.29e-51 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2802 K12823 - qsu:112035669 771.926