Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2758 ATGACTTCCTTCTTCTTCTTCCTCTGTATTCTCCTCATCCCAACCCTCATTTGCTCTTCCCCTTTCCACGACCCTGAATCCATCGTCCAAGAAGTGAACAGGAAAATCAATGCCTCTGTCGCTAGGCGGAATTTGGGCTACCTCTCGTGTGGAACTGGCAACCCTATCGACGATTGCTGGAGGTGCGATCCTAATTGGGAGAAGAACAGGCAGAGGCTAGCCGATTGTGCGATAGGGTTCGGGAAGAACGCCATTGGCGGGAGAAATGGAAGAATTTACGTGGTGACGGACGCCGGCGATGATGATCCGGTGAATCCCCGGCCGGGCACTCTCCGATACGCCGTGATTCAGGACGAACCGTTGTGGATTACATTCGCGAGGGACATGGTGATTCAGTTGAAGGAGGAGCTTATCATGAATTCCTTAAAGACCATCGACGGACGAGGCGCGAGCGTGCACATTGCGGGCGGGCCCTGCATAACGATCCAGTACGTAACCAACATTATAATCCATGGAATCCACATACACGACTGTAAGCAGGGAGGGAACGCCATGGTGAGGAGCTCCCCACGGCACTACGGGTGGAGAACCGTATCGGACGGCGACGGCGTGTCCATCTTCGGAGGCAGCCACGTGTGGGTGGATCACTGCTCGCTGTCGAACTGTAAAGATGGTCTGGTCGACGCGATTATGGGGTCCACCGCGATAACCATTTCTAACAATTACATGACGCACCATGACAAGGTCATGTTACTGGGTCACAGCGATTCTCATACACAAGACAAGAACATGCAAGTCACCATCGCTTTTAATCACTTCGGAGAAGGCCTCGTCCAAAGAATGCCGAGATGTAGGCTTGGATATTTCCATGTGGTGAACAATGACTACACTCATTGGGAAATGTATGCCATTGGAGGAAGTGCTAGCCCAACCATCAATAGCCAAGGCAACAGATTCATGGCACCCAATGACAGATTTAGCAAAGAGGTGACAAAGCACGAGGATGCTCCAGAGAGTGAATGGAGGGGCTGGAATTGGAGATCAGAAGGAGACTTGTTGCTGAACGGTGCGTTTTTCAGGGCATCAGGTGCGGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGCTTGAGTGCCAGGCCTTCTTCTCTGGTGGGTTCGCTCACCTCAGGCGCCGGCACACTCAGCTGCAGGAAAGGTTCTCGCTGCTGA 1209 0.5269 MTSFFFFLCILLIPTLICSSPFHDPESIVQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRNGRIYVVTDAGDDDPVNPRPGTLRYAVIQDEPLWITFARDMVIQLKEELIMNSLKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCKDGLVDAIMGSTAITISNNYMTHHDKVMLLGHSDSHTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRFMAPNDRFSKEVTKHEDAPESEWRGWNWRSEGDLLLNGAFFRASGAGASSSYARASSLSARPSSLVGSLTSGAGTLSCRKGSRC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2758 402 Gene3D - 53 395 IPR012334 -
Prci4g2758 402 SMART amb_all 128 325 IPR002022 -
Prci4g2758 402 SUPERFAMILY Pectin lyase-like 35 396 IPR011050 -
Prci4g2758 402 FunFam Pectate lyase 53 395 - -
Prci4g2758 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Prci4g2758 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Prci4g2758 402 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Prci4g2758 402 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Prci4g2758 402 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Prci4g2758 402 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Prci4g2758 402 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Prci4g2758 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Prci4g2758 402 PANTHER PECTATE LYASE 18-RELATED 23 400 IPR045032 GO:0030570
Prci4g2758 402 Pfam Pectate lyase 136 319 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2758 Prci-Chr4 39656411 39658463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2758 5 402 Polysaccharide Lyase AT5G63180 80.500 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2758 K01728 - gmx:100101868 725.702