Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2742 ATGGAGTCTTCTGAACCCGAATCAACGGAAGTTTCGAATTCTAACGATAACCCAGAATTGGGCTTTCGCTCGGCCTCGTCTTTCCCTAGTTCCAATCATGCTTCGGAAACATCAGATCTTAATCATCAGGCTGAGGTAGATGCACTTCATGAGGAGTTTCAGAGCAAGTTGATTTTGAAGGATAAGGATGAACAGAGCGAGATTGTGGACAAAGATGGTAAATTGGATGGTGGTGAGGAGATGTGTCATAAACACGGTGCTGGGGAATCTTACGAGGTAGATGGGTGGGGTGAATATAACGATAATTGGAATGGAATTGAGGACAATAATTGGACTACGAATGTGAACGGGAATGGGAATGATGAGGAAGGTGGAGATTATGATCTTGCTGTCCATGAAGAGGAGAGAAAAGAAGAGAGAAGCGGTGGTAGCAACCACCAGTACCCGGTGAGGCCCGAAGCAGAAGATTGTGCATTCTATCTTAAGACTGGAACTTGCAAGTTTGGATTCAATTGCAAATTTAACCACCCTGTTACCAGGAGGAAAAATCAGGCCGGTAAAGAGAAGGCAGGAGAGAGAGAAGAATCAGCAGATAGATTGGCGCAGGCAGAATGCAAGTATTATCTATCTTCAGGAGGTTGCAAGTTTGGAAAAGCTTGTAAATATAACCATTCAAGAGGAACGTGTTCAGTAGCCACAGTTCTAGAGCTTAATTTTCTTGGTCTGCCTATTCGTCTGGGAGAGAAAGAGTGCCCTTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAATTTAATCATCCAGATCCTACTGCTGTCGGAGGAGGTGATCTTGCTGCAAGATATGTTAATGGTGGGTCGATATCGTTACAAGGTGTCTCACAGCCATCTTTGCCCTCCTGGTCTTCTCCAAGAACATTAAATGAAACTACTGCTTTTATGCCAATGATGTTGTCACCTACTCAAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGTGTATCAGGCACCTGTGTACCTACCTGAGGGGAGTATGCGTCCACCTTCAGCATATGTTATGAACAACCCAGCGATTGAGAAAACTATTTATATGCATCATCAAAAGAAGACGCAGGTTGAAGAGTTTCCTGAAAGACCTGGGGAACCTGAATGCAGTTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAGGAATAGGATTACAAAGTTACCTTCTACATGCGCCCTCAGTGACAAGGGTCTTCCTTTGAGACCTGACCAGAATGTCTGCACGCATTACAGTCGCTACGGAATCTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCCATCGCCCTCTACAGGGTCTCCGTTTGATCAGCAATCGTCCTACTCAGACTCTGCTAGAGTTGAAGTGGCTGAAAATGGAGGGGCAACTGGGCAAATAATGCAATAA 1476 0.4417 MESSEPESTEVSNSNDNPELGFRSASSFPSSNHASETSDLNHQAEVDALHEEFQSKLILKDKDEQSEIVDKDGKLDGGEEMCHKHGAGESYEVDGWGEYNDNWNGIEDNNWTTNVNGNGNDEEGGDYDLAVHEEERKEERSGGSNHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPVTRRKNQAGKEKAGEREESADRLAQAECKYYLSSGGCKFGKACKYNHSRGTCSVATVLELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGGGDLAARYVNGGSISLQGVSQPSLPSWSSPRTLNETTAFMPMMLSPTQGVSPQSSEWNVYQAPVYLPEGSMRPPSAYVMNNPAIEKTIYMHHQKKTQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPRNRITKLPSTCALSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINPSPSTGSPFDQQSSYSDSARVEVAENGGATGQIMQ 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2742 491 SUPERFAMILY CCCH zinc finger 150 179 IPR036855 GO:0046872
Prci4g2742 491 MobiDBLite consensus disorder prediction 1 42 - -
Prci4g2742 491 SUPERFAMILY CCCH zinc finger 246 272 IPR036855 GO:0046872
Prci4g2742 491 Gene3D - 428 478 - -
Prci4g2742 491 MobiDBLite consensus disorder prediction 43 80 - -
Prci4g2742 491 SUPERFAMILY CCCH zinc finger 426 454 IPR036855 GO:0046872
Prci4g2742 491 PANTHER PROTEIN PHOSPHATASE RELATED 10 461 - -
Prci4g2742 491 Gene3D - 188 275 - -
Prci4g2742 491 ProSiteProfiles Zinc finger C3H1-type profile. 428 456 IPR000571 GO:0046872
Prci4g2742 491 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
Prci4g2742 491 MobiDBLite consensus disorder prediction 457 491 - -
Prci4g2742 491 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Prci4g2742 491 SMART c3hfinal6 381 408 IPR000571 GO:0046872
Prci4g2742 491 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Prci4g2742 491 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Prci4g2742 491 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Prci4g2742 491 SMART c3hfinal6 428 455 IPR000571 GO:0046872
Prci4g2742 491 SUPERFAMILY CCCH zinc finger 386 411 IPR036855 GO:0046872
Prci4g2742 491 Gene3D - 125 187 - -
Prci4g2742 491 Gene3D - 335 417 - -
Prci4g2742 491 MobiDBLite consensus disorder prediction 457 476 - -
Prci4g2742 491 MobiDBLite consensus disorder prediction 1 80 - -
Prci4g2742 491 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Prci4g2742 491 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 226 IPR000571 GO:0046872
Prci4g2742 491 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 271 IPR000571 GO:0046872
Prci4g2742 491 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 177 IPR000571 GO:0046872
Prci4g2742 491 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 383 408 IPR000571 GO:0046872
Prci4g2742 491 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 431 454 IPR000571 GO:0046872
Prci4g2742 491 ProSiteProfiles Zinc finger C3H1-type profile. 381 409 IPR000571 GO:0046872
Prci4g2742 491 SUPERFAMILY CCCH zinc finger 203 227 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2742 Prci-Chr4 39545901 39550522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2742 148 485 C2H2 Transcription Factor Family AT3G02830 38.630 3.82e-76 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci4g2742 zf-CCCH 1.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2742 - - gmx:100786894 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2742 4 39545901 39550522 Prci4g2742 4 39545901 39550522 ECH