Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2711 ATGGGTAGCGACGGACAGCTTTTGGTGGTGTGCGGTGACAAAAGCATAGGTTTGGGGTTAAAGATTTTGGACATGAGCACAGGAGAGGATCTTCTGCACCTACCAAACTGTGCTTCACCTTCGAGTGGGTTGATTTGCTTAAGGGGCCAGTTCATTGCAGCGTCGCAAATTAACAGACACGGATCTGTTGGTGGTGGAGCCATTGGCATCTGGGCGTTGAACAAGCCTCAACAACCTCTTTGGAGCTACCCATTGGAGGCCATTGGACCGCTTTCTTGCACTAAGGACGGCACATATCTTGCTGGAGGAGCTTTCTCGGGGAATGCTTACCTTTGGGATGTGACTAGCGGAAAATTGCTCAAGACTTGGAGGGCTCATGCTAAAACTTTGAACCGCGTGTTATTTTCTGATGATGATTCTCTCCTAATTTCTAGTTCTGATGATGGCATGATATGTGTTTGGTCTTTAATTAGTTTGTTAGATGTGGAAGGAACTGGAAGCTCTCTTTCTTTATTACATAGCTGGTCAGCGCATGAGTCCACCATAACAGGTCTCTTAACCACATCAGGCAATTACTTTCCAGTTTTAGTATCAAGTTCCCTCGATGGAACTTGCAAGGTTTGGGACTTTATCTCAGGACGTCTTGTGCAATCTCTTGTTCATCATTTGGCAATAACTTCCATTTTTCTTTACCAAGGAGAGGGGATTTTGTTTTATGGATCAGTAAATGGACATGTAATTGGCAAAAAGCTTGATGTAGGTGTGGAGGAAGAACCTTCCAGTATTGCATCAGACCAATTACTTGAACTGAAAGGACACAGTGGAACTATAACTGCCCTCACCTCAGGTCAAGCTGGCCTAATATCTGCCTCTGAAGACAACACAATCTGCATCTGGGATGTCATTAACTTGACAGTTATTCAAAGGATTGATGTCGAAAAAGGGAAAATAACTAATCTGGTGGTTGTTCAGCGGTCTTCGATGCTCTCTACATCAAACCATAGGAGAGCTTCCAATCAGTATACTGTCTCTTCTCTCGACAAGTATCCTCAGCTGATCAACTCATCGAAGGAAAAGGGAACTACAACTCTCCATTCCTTAGAATGCCCCCAGCAAATGTCTGATGGGCAGAAAGTGAACATGCCTGTAGACATGGCCATGCAAATGAAGGTGGAAACAAGTATGGAAAATCGTGTCTGGGCAACGAAGATGGCAAAGCATGTGATGGACATAAATAAATACTTGCAGTCATGTTTGTTAGACTTGATGCAGCAAAGACTGTTTGAAAAGGACACCAAAAGAATGGCTAAAAAGAAGACCAGGGTTCAGAGTTAG 1335 0.4382 MGSDGQLLVVCGDKSIGLGLKILDMSTGEDLLHLPNCASPSSGLICLRGQFIAASQINRHGSVGGGAIGIWALNKPQQPLWSYPLEAIGPLSCTKDGTYLAGGAFSGNAYLWDVTSGKLLKTWRAHAKTLNRVLFSDDDSLLISSSDDGMICVWSLISLLDVEGTGSSLSLLHSWSAHESTITGLLTTSGNYFPVLVSSSLDGTCKVWDFISGRLVQSLVHHLAITSIFLYQGEGILFYGSVNGHVIGKKLDVGVEEEPSSIASDQLLELKGHSGTITALTSGQAGLISASEDNTICIWDVINLTVIQRIDVEKGKITNLVVVQRSSMLSTSNHRRASNQYTVSSLDKYPQLINSSKEKGTTTLHSLECPQQMSDGQKVNMPVDMAMQMKVETSMENRVWATKMAKHVMDINKYLQSCLLDLMQQRLFEKDTKRMAKKKTRVQS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2711 444 SUPERFAMILY WD40 repeat-like 4 334 IPR036322 GO:0005515
Prci4g2711 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 156 - -
Prci4g2711 444 SMART WD40_4 116 155 IPR001680 GO:0005515
Prci4g2711 444 SMART WD40_4 168 209 IPR001680 GO:0005515
Prci4g2711 444 SMART WD40_4 76 113 IPR001680 GO:0005515
Prci4g2711 444 SMART WD40_4 263 300 IPR001680 GO:0005515
Prci4g2711 444 Gene3D - 2 235 IPR015943 GO:0005515
Prci4g2711 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 301 - -
Prci4g2711 444 Gene3D - 260 409 IPR015943 GO:0005515
Prci4g2711 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 156 IPR001680 GO:0005515
Prci4g2711 444 Pfam WD domain, G-beta repeat 266 300 IPR001680 GO:0005515
Prci4g2711 444 Pfam WD domain, G-beta repeat 171 209 IPR001680 GO:0005515
Prci4g2711 444 Pfam WD domain, G-beta repeat 117 155 IPR001680 GO:0005515
Prci4g2711 444 PANTHER WD-REPEAT PROTEIN 18 8 424 IPR045227 -
Prci4g2711 444 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Prci4g2711 444 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Prci4g2711 444 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Prci4g2711 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 309 IPR001680 GO:0005515
Prci4g2711 444 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Prci4g2711 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 218 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2711 Prci-Chr4 39307939 39311781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2711 80 304 U-box Gene Family AT2G33340 26.050 2.54e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2711 K14829 - cave:132176169 510.375