Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2709 ATGGCTAGTTTTAGTTCTCTTTCATTGTGTCCATACAGCCTTTATCGTCACCCGAACCCGAAAAGGCGTCCCATTTTGTGCTCGGTTGGCTCTTCTTCGCTCGCAGGTGTTGATGGATCTAAAGTGCCTCGCAAAAGATCAAGAAAAATTGAAGGTCCTAGGAAAAGCATGGAAGACTCTGTTCAACGCAAGATGGAGCAGTTTTATGAAGGATCTGAGGGGCCACCCCTGCGAGTTCTTCCTATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTCGGGAACAATGATCGTTATATCCTTATTGATGCTGGTGTCATGTTTCCAGACTATGATGAGCTTGGAGTCCAAAAGATTATACCTGATACGACATTTATAAGAAAATGGAAGCACAAAATTGAAGCAGTGGTTATAACGCACGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATACCAGCATTGGATATCCATACTCCAATTTTTGCATCTTCCTTTACAATGGAGCTTATTAGAAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCACGACTCAAAGTATTCCGAACAAAGAAGAAGTTTGTGGCTGGGCCATTTGAAATAGAGCCAATCAGGGTGACCCATTCTATCCCTGATTGTTGTGGGTTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCATACTGGGGACTGGAAGATTGATGAATCACCAATGGATGGGAAAGTTTTTGACCGTGAAACTTTGGAGGAACTCTCTAAAGAAGGAGTAACACTAATGATGAGTGATTCAACAAACATACTTTCACCTGGAAGAACAGCTAGTGAGTCTAACGTGGCAGATGCACTGTTAAGGCATATTTCTGCTGCTAAAGGAAGGGTTATTACAACCCAGTTTGCATCAAATATCCATCGTATTGGAAGTGTGAAAGCTGCAGCTGATTTAACTGGTAGAAAAATGGTATTTGTTGGCATGTCTTTACGGACATATCTAGATGCAGCTTGGAAGGATGGAAAAGCACCGTTCGATCCATCCACCCTGGTGAAAGTGGAGGATATTGATGCTTATGCTCCTAAGGATTTGCTGATTGTAACAACTGGATCTCAGGCAGAACCTCGTGCTGCCTTGAATCTTGCATCATATGGTGGTGGTCATTCTTTCAAACTGACCAAGGAAGATATAATTTTGTATTCAGCTAAGGTTATCCCTGGCAATGAGTCTCGTGTGATGAAAATGATGAACCGCATAGCAGAGATTGGATCATCAATAGTAATGGGGAAGAATGAGGGGCTGCACACGTCTGGTCATGCGTATCGTGGAGAATTGGAGGAAGTGCTTAGAATAGTGAAACCACAACACTTTCTTCCCATACATGGAGAACTCTTGTTCCTGAAGGAGCACGAATTACTTGGAAAGTCAACTGGCATTCGACACACTGCTGTTATTAAGAACGGAGAGATGCTTGGCGTTTCACACTTAAGAAATAGAAAAGTCCTTTCCAATGGTTTTGTTTCCCTTGGAAAAGAGAACTTACAGTTGAAGTACAGTGATGGGGACAAAGCATTTGGTACATCTAGTGAACTCTTTATTGATGAAAGATTGAGAGTTGCTTTAGATGGAATTATCGTGGTCAGCATGGAAATATTTCGCCCTCAAAATAGTGAAAGTCATGCTGAAAGCACCTTGAAAGGGAAGATAAGAATTACCACTAGATGCCTATGGCTTGACAAAGGAAAGCTGCTTGATGCGCTTCATAAAGCTGCTCATGCTGCACTTTCAAGCTGCCCGGTAAGCTGTCCATTGGCTCACATGGAAAGAATTGTATCTGAGGTATTGAGGAAGTTGGTGAGGAAGTATAGTGGCAAAAGACCAGAAGTTATAGCTATTGCTACAGAAAACCCTGCAGCTGTTCTTGCTGATGAGGTAAAAGTACGGTTGTCAGGAAAATCTCATTCGGGTCTTGGATTACCATCATTGAGAAAAGCTGTGGATGGACGTAAAGAGGAAAAGAAGTCCAGTAAAATGCCAATAAAAGGAGATGATGGCACTGATGTTGAAGGACTCCTACCTGAGGAAGATTCCCCTACCTCTAGTGGAGCTGAGGGTGATTTCCCTGATTCAGAGGATTCTGACGGATTTTGGAAATCATTCATCACACCTTCAACCGCTGAAAAGTCGATCAAAGCTAACAACGGTTATATTCCACGGAAGCAGCAAGATTCCCAGCTGATGAAAGATGATTCTGAAGACTCTGGAGAAACCAAGTCTGAACCCATGCCTTCAAAAACAGCGAAGAGAAATAAATGGAAACCCGAGGAAGTGAAGAAGCTGATTGTTATGCGTGGGGAGCTTCACGAGAGATTCCAAGTTGTGAAGGGAAGAATGGTTCTCTGGGAAGAGATATCTCAAAAGTTGTTGGCTGATGGTATCCACAGAAGTCCAGGGCAATGTAAATCTCTGTGGACTTCTTTGATACAAAAATATGAGGAGATCAAGAATGGGAAGGCAAGCAAGAAAAGCTGGCCATATACGGAGGACATGGACAGGATATTGTCGGATAACGAGGCGCTAGCAGCAAAATGA 2592 0.4282 MASFSSLSLCPYSLYRHPNPKRRPILCSVGSSSLAGVDGSKVPRKRSRKIEGPRKSMEDSVQRKMEQFYEGSEGPPLRVLPIGGLGEIGMNCMLVGNNDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWKHKIEAVVITHGHEDHIGALPWVIPALDIHTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTKKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDESPMDGKVFDRETLEELSKEGVTLMMSDSTNILSPGRTASESNVADALLRHISAAKGRVITTQFASNIHRIGSVKAAADLTGRKMVFVGMSLRTYLDAAWKDGKAPFDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGGGHSFKLTKEDIILYSAKVIPGNESRVMKMMNRIAEIGSSIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRKVLSNGFVSLGKENLQLKYSDGDKAFGTSSELFIDERLRVALDGIIVVSMEIFRPQNSESHAESTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVSCPLAHMERIVSEVLRKLVRKYSGKRPEVIAIATENPAAVLADEVKVRLSGKSHSGLGLPSLRKAVDGRKEEKKSSKMPIKGDDGTDVEGLLPEEDSPTSSGAEGDFPDSEDSDGFWKSFITPSTAEKSIKANNGYIPRKQQDSQLMKDDSEDSGETKSEPMPSKTAKRNKWKPEEVKKLIVMRGELHERFQVVKGRMVLWEEISQKLLADGIHRSPGQCKSLWTSLIQKYEEIKNGKASKKSWPYTEDMDRILSDNEALAAK 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2709 863 MobiDBLite consensus disorder prediction 41 57 - -
Prci4g2709 863 ProSiteProfiles Myb-like domain profile. 764 828 IPR001005 -
Prci4g2709 863 Gene3D - 278 428 IPR042173 -
Prci4g2709 863 PANTHER RIBONUCLEASE J 1 863 - -
Prci4g2709 863 CDD GT1 770 835 - -
Prci4g2709 863 Pfam Myb/SANT-like DNA-binding domain 769 853 IPR044822 -
Prci4g2709 863 Pfam Metallo-beta-lactamase superfamily 90 234 IPR001279 -
Prci4g2709 863 SMART Lactamase_B_5a 89 286 IPR001279 -
Prci4g2709 863 MobiDBLite consensus disorder prediction 664 688 - -
Prci4g2709 863 Gene3D - 772 833 - -
Prci4g2709 863 MobiDBLite consensus disorder prediction 743 771 - -
Prci4g2709 863 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 434 471 IPR011108 -
Prci4g2709 863 MobiDBLite consensus disorder prediction 33 57 - -
Prci4g2709 863 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Prci4g2709 863 Gene3D - 81 493 IPR036866 -
Prci4g2709 863 MobiDBLite consensus disorder prediction 658 771 - -
Prci4g2709 863 MobiDBLite consensus disorder prediction 717 741 - -
Prci4g2709 863 CDD RNaseJ_MBL-fold 80 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2709 Prci-Chr4 39286172 39295299 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2709 771 855 Trihelix Transcription Factor Family AT2G38250 35.632 4.88e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Prci4g2709 Lactamase_B 1.6e-11 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2709 - - qsa:O6P43_022564 1388.63