Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2674 ATGCTCTCATTTCGTTCTTGCTTCTCTCCCCCATTCTTTCACCCCGTCAAGTCTCTCTTTCGTCTCGAATTTTCTCTCACACCCCCTAAAACTTTCTTGTTCAAGCCCATCTTCCTTTCAGCTCATAATCGCTGTGGCAACATGTCGTCACGACCGTCTGCCTTTGATGCTCTCATGTCTGGGGCTCGTGCCGCTGCCAAGAAAAAGCCCCAATCATCATCGCCCGGGAAACGAAAAGCCCCGGATTCTAATTCAACCCAAAACCCTAAAACCCTCAAATGCACGGAAAGTACTGGTCAGTCTTTGGAACCCAGTAACGATACTAAGTCCACTGACATTAAAGATTCCGAGAAGGCACAAGAACCGACCAAAGAACACTTGAGCAACGGGGGGCTGACAGGGTCTGAGGGTGCACTTGCGGCGAAGAGAATGCGCGTCGTTGGTTCCCAGGAGAAGATTACAGAGCTGAAGAAAAAAGTTTCTCTTTTGAAGAAGAAACCTACAGATTTTGACCCTAGTTCCATGTCTTGTTGGGAGAAGGGTGAACCTGTGCCCTTTCTGTTTCTCGGTTTGGCATTTGATATGATTGCAGAAGAAACAGGACGCATTGTGATTACAGATATAGTGTGCAATATGCTGAGGACTGTTATGAACACTACACCCGAGGATCTGGTGGCTGTTGTTTATCTTTCCGCAAATAAGATTGCCACTGCACATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCAATTATCAAGGCGCTTGCAGAGGCATGTGGAAGGACTGAGGTGCAGATAAAAAATCAGTATAAGGAAAAAGGTGATTTGGGCCTTGTTGCCAAGGCAAGCCGCTCGTCTCAAGCAATGATGCGGAAACCTGATCCATTAACTATTAGGAAGGTTTTCAACACCTTTCGTCTTATTGCCAAGGAATCTGGTAAAGACAGCCACGAGAAGAAAAAGAATCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGTCTGCTTCAGTCAAAGTTGCGGATTGGGTATGCTGAGCAAACTCTCTTAGCTGCACTGGGCCAAGCTGCGGTATACACTGAAGGACATTCTATACCACCTCCTAAAGTTCAGTCCCCCTTAGAGGAGGCTGCAAAGATTGTTAAACAAGTATATTCAGTTCTTCCTGTGTATGACAAAATAATTCCTGCATTGCTTAGTGGTGGTGTATGGAAACTTCCAGAGACATGTCACTTTACTCTTGGTGTTCCAGTTGGACCTATGTTGTCTAAAGCAACTAAGGGTGTATCTGAAGTTCTAAATAAATTCCAGGATGCAGAGTTTACTTGTGAATACAAATATGATGGAGAGCGTGCCCAGGTACATTACATGGACAATGGATCAGTTGAGATTTACAGTAGAAATGCTGAACGGAATACGGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGGGTAAAGAAATCGTCTGTATCATCATTTGTTCTTGATTGTGAACTTGTTGCATATGACCGGGAGAAAAAGAAAATTCTTCCTTTTCAGGTTCTCAGTACCCGAGCTCGCAAAAATGTATCTATGAGTGATATTAAAGTCGATGTATGCATATTTGCATTTGATATCTTGTATCTCAACGGCAAGCCACTACTTCAGGAAAACCTGAAAATTCGGAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAACCTGGATTTTTTCAGTTTGCAACAGCAATAACATCAAATGATGTTGAGGAAATACAAAAGTTTCTCGATGCAGCTGTTGATGCTAGTTGTGAGGGTTTAATTATCAAAACATTGTATGAAGACGCGACGTATGAACCTTCCAAGCGGTCACTGAACTGGCTAAAACTGAAGAAAGATTATCTTGAAAATATAGGGGACTCACTGGATTTGGTACCTATTGCTGCATTTCATGGTCGTGGAAAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGACAGCAATAATGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAACACTTGAAGAACGTTCTGCTAGTCTTCGTACTAAAGTGATTCCGAAACCAAAGCCTTATTATCGATATGCAGAGACAATCAATCCTGATGTATGGTTTGAAGCCTCTGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATTAGCCCCGTTCACCGTGCTGCAGTAGGCATAGTAGATTCGGATAAGGGCATATCTCTTCGATTCCCTCGTCTGGTTCGAGTTCGGGATGACAAAGCTCCTGAACAAGCCTCATCATCTGAGATGGTTGCTGAAATGTATTCTGCTCAAAAACACAATCACCCGAACAACCACGATGATGAAGAGGATTGA 2397 0.4355 MLSFRSCFSPPFFHPVKSLFRLEFSLTPPKTFLFKPIFLSAHNRCGNMSSRPSAFDALMSGARAAAKKKPQSSSPGKRKAPDSNSTQNPKTLKCTESTGQSLEPSNDTKSTDIKDSEKAQEPTKEHLSNGGLTGSEGALAAKRMRVVGSQEKITELKKKVSLLKKKPTDFDPSSMSCWEKGEPVPFLFLGLAFDMIAEETGRIVITDIVCNMLRTVMNTTPEDLVAVVYLSANKIATAHEGLELGIGDASIIKALAEACGRTEVQIKNQYKEKGDLGLVAKASRSSQAMMRKPDPLTIRKVFNTFRLIAKESGKDSHEKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGYAEQTLLAALGQAAVYTEGHSIPPPKVQSPLEEAAKIVKQVYSVLPVYDKIIPALLSGGVWKLPETCHFTLGVPVGPMLSKATKGVSEVLNKFQDAEFTCEYKYDGERAQVHYMDNGSVEIYSRNAERNTGKFPDVVAAISRVKKSSVSSFVLDCELVAYDREKKKILPFQVLSTRARKNVSMSDIKVDVCIFAFDILYLNGKPLLQENLKIRREHLYASFEEEPGFFQFATAITSNDVEEIQKFLDAAVDASCEGLIIKTLYEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEATLEERSASLRTKVIPKPKPYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKAPEQASSSEMVAEMYSAQKHNHPNNHDDEED 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2674 798 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 451 459 IPR016059 GO:0003909
Prci4g2674 798 Gene3D - 636 797 IPR012340 -
Prci4g2674 798 Gene3D - 437 635 - -
Prci4g2674 798 NCBIfam ATP-dependent DNA ligase 243 782 IPR000977 GO:0003910|GO:0005524|GO:0071897
Prci4g2674 798 FunFam DNA ligase 636 795 - -
Prci4g2674 798 Pfam DNA ligase N terminus 189 360 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci4g2674 798 Pfam ATP dependent DNA ligase domain 427 631 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Prci4g2674 798 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 167 417 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci4g2674 798 MobiDBLite consensus disorder prediction 765 798 - -
Prci4g2674 798 MobiDBLite consensus disorder prediction 61 135 - -
Prci4g2674 798 Pfam ATP dependent DNA ligase C terminal region 656 767 IPR012309 GO:0003910|GO:0006281|GO:0006310
Prci4g2674 798 ProSitePatterns ATP-dependent DNA ligase signature 2. 605 631 IPR016059 GO:0003909
Prci4g2674 798 FunFam DNA ligase 427 633 - -
Prci4g2674 798 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 419 637 - -
Prci4g2674 798 CDD Adenylation_DNA_ligase_I_Euk 416 634 - -
Prci4g2674 798 Gene3D DNA ligase/mRNA capping enzyme 456 581 - -
Prci4g2674 798 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 76 793 - -
Prci4g2674 798 FunFam DNA ligase 162 429 - -
Prci4g2674 798 ProSiteProfiles ATP-dependent DNA ligase family profile. 533 669 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Prci4g2674 798 MobiDBLite consensus disorder prediction 108 124 - -
Prci4g2674 798 MobiDBLite consensus disorder prediction 76 107 - -
Prci4g2674 798 SUPERFAMILY Nucleic acid-binding proteins 639 785 IPR012340 -
Prci4g2674 798 Gene3D - 162 429 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Prci4g2674 798 CDD OBF_DNA_ligase_I 639 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2674 Prci-Chr4 39027885 39037290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2674 49 798 Core DNA Replication Machinery Family AT1G08130 69.921 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2674 K10747 - qsa:O6P43_028431 1201.42