Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2659 ATGGACTGGAATATGAAAGCAGCTTCATGGGATTTGGCTGAATTAGACGAAGCAACAGGCTTGCCTAGCATAGAAACAATTGATGGGTCCAGCAGATTTCGAAGTGATAGAAGCAAAGGGGAATTTTCTGTGGTGAAGCTTGGTCAGGTGGGGAATTCTAGTAGTAGTAATGAACCAGCAGTGGCCAAGTGGAAAGATGTTGGGGGAGTCTCCAAAGTGATGACATCATCTTCATCGTCTTCCTCAGGATCATCTAAGAGAGCTCGAGCAATTAACAATGGAACCCAACCAGTGTCATGCCTTGTGGATGGGTGCAATTCAGATCTCAGTAATTGCAGGGACTATCACAGGCGCCACAAGGTCTGCGAACTCCATTCCAAGACCCCAGTGGTCACAATTGGCGGCCACAAGCAAAGGTTCTGTCAACAGTGTAGCAGGTTTCATTCGCTGGAGGAATTTGATGAAGGGAAAAGGAGTTGCAGGAAGCGTTTAGATGGACACAACCGACGGAGGAGGAAGCCGCAGGCAGAAGGGGTTGGGAGATCTGGAAGCTTTTTGTCGAATTACCAAGGAACTCACTTGTTGCCCTTCTCAAGCTCCCACGTGTATCCTTCCACTGCTATGGCTCACCCTGCTGCTTGGAACGCAGAAGTTAGGCTCCACCACAACCCTCATCATCAACTCCATCACTTAATTGATCATAAACAGGACCTCTTTCTGGGATCTTCATCGTCGTCCTATTCAGAAGCAAGTAATAATGATAACAGCATTAATACTAACAAGCAGCAGCTAGCTTGCTTGCAAGGTGACAACTCAGCATCAATGGAGAACAACCAGAGTAACAATCAGCAAGCTCTACCACCACCTGCTTCTGTGTGTCCAACGTTTCTGAGACCCACACCATTGCCGGCAGCTCCACTTTACGGCGGGGACCACCATGACTCTCACTGTGCTCTCTCTCTCTGTCATCCCCACAGACGAGGCACACAAGTGGGAATGGTTTGA 1005 0.4846 MDWNMKAASWDLAELDEATGLPSIETIDGSSRFRSDRSKGEFSVDXKLGQVGNSSSSNEPAVAKWKDVGGVSKVMTSSSSSSSGSSKRARAINNGTQPVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPVVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEGVGRSGSFLSNYQGTHLLPFSSSHVYPSTAMAHPAAWNAEVRLHHNPHHQLHHLIDHKQDLFLGSSSSSYSEASNNDNSINTNKQQLACLQGDNSASMENNQSNNQQALPPPASVCPTFLRPTPLPAAPLYGGDHHDSHCALSLCHPHRRGTQVGMV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2659 335 FunFam Squamosa promoter-binding-like protein 14 92 162 - -
Prci4g2659 335 Pfam SBP domain 101 174 IPR004333 GO:0003677
Prci4g2659 335 Gene3D - 92 162 IPR036893 GO:0003677|GO:0005634
Prci4g2659 335 SUPERFAMILY SBT domain 99 178 IPR036893 GO:0003677|GO:0005634
Prci4g2659 335 MobiDBLite consensus disorder prediction 271 293 - -
Prci4g2659 335 MobiDBLite consensus disorder prediction 165 185 - -
Prci4g2659 335 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 53 323 IPR044817 GO:0003677
Prci4g2659 335 MobiDBLite consensus disorder prediction 271 290 - -
Prci4g2659 335 ProSiteProfiles Zinc finger SBP-type profile. 98 175 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2659 Prci-Chr4 38920982 38923401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2659 1 221 SBP-box Gene Family AT5G50670 53.712 4.50e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci4g2659 SBP 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2659 - - mtr:25502014 348.206