Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2640 ATGAAAGAATCGGAGAACGATATTCTCAACGGGTCCATTCAGCTCCTTTCTTCTCTTCTGGATGAGATTCCCACTGTTGTTAACTTTAAGGGTAAATGGTCTCTAATTAGAGCCAAACTCTTCGATCTCCAGACTCAGCTGACGGATTTCTCCTCTGAGTTCCCTAATTACCCGTCCAATTCTCTATCGCTCGAGCTACTTCAGTTCATTGCGCACACCCTAAACGAGGCCGTTTCACTTGCCAAAGAATGCCAGTCCCCCAACTTATCCCAGGGAAAGCTCAAAACTCAGAGCGACATTGATTCGGTCCTCGCTAAGCTGGATCGCCATGTGAAAGACTGCGAGATTCTGTTCAGGAGTGGGGTTTTGCAAGACGGTGTCATTTCCAGCGCGTCTAAAAGAGAGGCCGTACGGTCTGAATCCAGGAACTTGATTACTCGTCTGCAAATCGGTTCTGCTGAGTCCAGGAATTCAGCGATGGACTCCTTGTTGGGTTTACTCGAAGAGGATGACAAGAATGTGATGATAGCTGTGGCGCAGGGTGTGGTTCCGGTGCTTGTCCGCTTACTGGATTCTGCCTCTCCCGAGATGAAGGAGAAGACTGTTGCTGCTATCTCCAGAGTCTCCATGGTGGATAGTAGCAAACATGTTTTGATTGCCGAGGGTTTGTTGCTTTTAAATCAATTGGTTCGAGTTCTCGATTCGGGGAGTGGATTTGCCAAACAGAAATCTTGCATAGCCCTCCAGGCTCTAAGTTTCTCCAAAGAGAATGCTAGGGCAATCGGGTCTAGAGGTGGAATCTCGTCACTATTGGAGATTTGTCAAGCCGGCACGCCTGGTTCCCAAGCTTCGGCGGCAGGGGTTTTGAGAAATCTTTCTGTCTTTCCTGAAATTAGAGACAATTTTATCGAAGAAAACACCATTGTTGTTCTATTGGGGCTTGCCTCATCCGGAACTGCCTTAGCGCAAGAAAATGCAATTGGTTGCTTGTCCAACTTAATTTCTGAAGACGAAAGTTTAAAACTTTTGTTTGCAAAGGAAGGAGGAATCGAGTGCTTGAAGAATTTTTGGGACTCAGCTCCGGCAGTTCGGAGTCTTGAAGTCGCAGCGGAGTTGTTGAGTCGCCTGGCCTCTAGTTCACCGATTGCTGAAGTTCTTGTATCTGATGGGTTTATACTCCGAGTTGTGGGTGTGTTGAATTGCGGAATTCTAGGGGTGAGAACTGCGGCTGCTCGAGCTGTTTATGCTTTGGGGATGTACAACACTAAATCGAGGAAAGATATGGGTGAATGTGGCTGTATGACCCCATTGATCAAGATGCTGGATGGCAAAGCTGTGGAAGAGAAAGAAGCAGCTGCAAAAGCGTTGTCAGTACTCATGTTGTATGCGGGCAATAGAAAAATTTTCCGAAAGGATGAGAGGGGTATAGCTAGTGCTGTTCAACTGTTGGATCCTTCAATACAGAATTTGGATAAAAAATATCCTGTTGCAGTGCTGACCTCGCTTGTACATTCAAAGAAATGTAGGAAACATATGGTGGCGGCCGGTGCTTGTGTATATATGCAAAAACTTGTTGAGATGGATGTTGAAGGTGCTAAGAAACTCTTGGATAGCCTTGGTAGTGGTAAGATATGGGGAGTTTTTGCAAGACCCTAA 1656 0.462 MKESENDILNGSIQLLSSLLDEIPTVVNFKGKWSLIRAKLFDLQTQLTDFSSEFPNYPSNSLSLELLQFIAHTLNEAVSLAKECQSPNLSQGKLKTQSDIDSVLAKLDRHVKDCEILFRSGVLQDGVISSASKREAVRSESRNLITRLQIGSAESRNSAMDSLLGLLEEDDKNVMIAVAQGVVPVLVRLLDSASPEMKEKTVAAISRVSMVDSSKHVLIAEGLLLLNQLVRVLDSGSGFAKQKSCIALQALSFSKENARAIGSRGGISSLLEICQAGTPGSQASAAGVLRNLSVFPEIRDNFIEENTIVVLLGLASSGTALAQENAIGCLSNLISEDESLKLLFAKEGGIECLKNFWDSAPAVRSLEVAAELLSRLASSSPIAEVLVSDGFILRVVGVLNCGILGVRTAAARAVYALGMYNTKSRKDMGECGCMTPLIKMLDGKAVEEKEAAAKALSVLMLYAGNRKIFRKDERGIASAVQLLDPSIQNLDKKYPVAVLTSLVHSKKCRKHMVAAGACVYMQKLVEMDVEGAKKLLDSLGSGKIWGVFARP 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2640 551 Gene3D - 363 529 IPR011989 -
Prci4g2640 551 Gene3D - 88 362 IPR011989 -
Prci4g2640 551 SUPERFAMILY ARM repeat 143 509 IPR016024 -
Prci4g2640 551 SMART arm_5 254 294 IPR000225 GO:0005515
Prci4g2640 551 SMART arm_5 295 335 IPR000225 GO:0005515
Prci4g2640 551 SMART arm_5 170 210 IPR000225 GO:0005515
Prci4g2640 551 SMART arm_5 421 461 IPR000225 GO:0005515
Prci4g2640 551 SMART arm_5 337 378 IPR000225 GO:0005515
Prci4g2640 551 Pfam Armadillo/beta-catenin-like repeat 170 206 IPR000225 GO:0005515
Prci4g2640 551 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 223 IPR000225 GO:0005515
Prci4g2640 551 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2640 Prci-Chr4 38698440 38700603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2640 137 410 U-box Gene Family AT2G23140 26.277 7.44e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2640 - - qsa:O6P43_030678 837.795