Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2635 ATGGCAGCTTTTTCTCATTACCAGTACCACCACCTTCCTTTCCTCCTTGACACTTCCTCGTTCGTCTCGTCAGCTTTCGGAGACCAGCCTCTTATAAATAGTAACAGCACTCTTCATCATCATCATTATCCCCAGCAAGAGCAGCACCTACCTCCAATTCACCAGACTTCTTCAAACTTTGCCGATAACGAAGAAGAAACTGATAATAATCAAAGCTCCGACATGACTGTTACTACTGATACCAAAACTCACACTCCTCCCGACACCCCCATGGCTCAGGTTAAGCTTGAAAATGGCGACCATACTCCTCAGACGAAGAAGAAGAAGAGGGTGAATTGCAGAAATGGTTCTTCGAAGAAGGGAGCAGAAGGAAGAGACAAGAAACAGAAGAAGAGCAATAGTAATGGTGTGGTGAGAGAAGAGGAAAAGCCAAAAGCAGGAGAGAAACAGGAACAGGAGAAGAAAATTACACTAGAGCCCCCAACAGGCTATATCCATGTCAGAGCCAGGAGGGGTGAAGCAACGGATAGTCACAGCCTCGCCGAAAGGGTGAGAAGAGAGAAAATAAGTGAGAGGATGAGGATGTTGCAGCGACTCGTCCCAGGTTGTGATAAGGTAACTGGAAAAGCGCTCGTGTTAGACGAAATCATCAACTATGTTCAGTCCCTTCAGAACCAAGTGGAGTTTTTGACGTTGAAGCTTGCTGCTGTAAATCCCATGTTCGGAGACTTCACAGCGGGCCAAGACACTCTCATGGGTACACCAGATAGATTAAACAGTGTAGCTTCGCCGCCTCTGCCATCCGTTCAACAATGCAGTACCAATCAGGCCACACATTTTGCTGATGACTATCCTTTGGATTTTATTCAAGGACAGAGATCCAATGTCTTCTCTTCCCTGGATGCTGTTGGTGAGTTCTGGGATGCAGAAGACCCACGACAAAAGTTTCCTAATCCTCGCGGCTTCAGCACCGACCTATGTTCCTTTCAATCTTGA 996 0.4659 MAAFSHYQYHHLPFLLDTSSFVSSAFGDQPLINSNSTLHHHHYPQQEQHLPPIHQTSSNFADNEEETDNNQSSDMTVTTDTKTHTPPDTPMAQVKLENGDHTPQTKKKKRVNCRNGSSKKGAEGRDKKQKKSNSNGVVREEEKPKAGEKQEQEKKITLEPPTGYIHVRARRGEATDSHSLAERVRREKISERMRMLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLTLKLAAVNPMFGDFTAGQDTLMGTPDRLNSVASPPLPSVQQCSTNQATHFADDYPLDFIQGQRSNVFSSLDAVGEFWDAEDPRQKFPNPRGFSTDLCSFQS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2635 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 223 IPR011598 GO:0046983
Prci4g2635 331 MobiDBLite consensus disorder prediction 42 156 - -
Prci4g2635 331 CDD bHLH_AtBPE_like 163 239 - -
Prci4g2635 331 Pfam Helix-loop-helix DNA-binding domain 177 224 IPR011598 GO:0046983
Prci4g2635 331 SMART finulus 179 229 IPR011598 GO:0046983
Prci4g2635 331 Gene3D - 170 240 IPR036638 GO:0046983
Prci4g2635 331 MobiDBLite consensus disorder prediction 49 88 - -
Prci4g2635 331 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 61 268 IPR024097 GO:0006355
Prci4g2635 331 MobiDBLite consensus disorder prediction 119 156 - -
Prci4g2635 331 FunFam Basic helix-loop-helix transcription factor 170 242 - -
Prci4g2635 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 239 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2635 Prci-Chr4 38652947 38655480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2635 1 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 44.981 1.60e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci4g2635 HLH 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2635 - - gmx:100796018 300.827