Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2634 ATGGCAGCTTTTTCTCATTACCAGTACCACCACCTTCCTTTCCTCCTTGACACTTCCTCGTTCGTCTCGTCAGCTTTCGGAGACCAGCCTCTTATAAATAGTAACAGCACTCTTCATCATCATCATTATCCCCAGCAAGAGCAGCACCTACCTCCAATTCACCAGACTTCTTCAAACTTTGCCGATAACGAAGAAGAAACTGATAATAATCAAAGCTCCGACATGACTGTTACTACTGATACCAAAACTCACACTCCTCCCGACACCCCCATGGCTCAGGTTAAGCTTGAAAATGGCGACCATACTCCTCAGACGAAGAAGAAGAAGAGGGTGAATTGCAGAAATGGTTCTTCGAAGGGAGCAGAAGGAAGAGACAAGAAACAGAAGAAGAGCAATAGTAATGGTGTGGTGAGAGAAGAGGAAAAGCCAAAAGCAGGAGAGAAACAGGAACAGGAGAAGAAAATTACACTAGAGCCCCCAACAGGCTATATCCATGTCAGAGCCAGGAGGGGTGAAGCAACGGATAGTCACAGCCTCGCCGAAAGGGTGAGAAGAGAGAAAATAAGTGAGAGGATGAGGATGTTGCAGCGACTCGTCCCAGGTTGTGATAAGGTAACTGGAAAAGCGCTCGTGTTAGACGAAATCATCAACTATGTTCAGTCCCTTCAGAACCAAGTGGAGTTTTTGACGTTGAAGCTTGCTGCTGTAAATCCCATGTTCGGAGACTTCACAGCGGGCCAAGACACTCTCATGGGTACACCAGATAGATTAAACAGTGTAGCTTCGCCGCCTCTGCCATCCGTTCAACAATGCAGTACCAATCAGGCCACACATTTTGCTGATGACTATCCTTTGGATTTTATTCAAGGACAGAGATCCAATGTCTTCTCTTCCCTGGATGCTGTTGGTGAGTTCTGGGATGCAGAAGACCCACGACAAAAGTTTCCTAATCCTCGCGGCTTCAGCACCGACCTATGTTCCTTTCAATCTTGA 993 0.4663 MAAFSHYQYHHLPFLLDTSSFVSSAFGDQPLINSNSTLHHHHYPQQEQHLPPIHQTSSNFADNEEETDNNQSSDMTVTTDTKTHTPPDTPMAQVKLENGDHTPQTKKKKRVNCRNGSSKGAEGRDKKQKKSNSNGVVREEEKPKAGEKQEQEKKITLEPPTGYIHVRARRGEATDSHSLAERVRREKISERMRMLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLTLKLAAVNPMFGDFTAGQDTLMGTPDRLNSVASPPLPSVQQCSTNQATHFADDYPLDFIQGQRSNVFSSLDAVGEFWDAEDPRQKFPNPRGFSTDLCSFQS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2634 330 Gene3D - 169 239 IPR036638 GO:0046983
Prci4g2634 330 MobiDBLite consensus disorder prediction 42 155 - -
Prci4g2634 330 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 61 267 IPR024097 GO:0006355
Prci4g2634 330 MobiDBLite consensus disorder prediction 49 88 - -
Prci4g2634 330 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Prci4g2634 330 SMART finulus 178 228 IPR011598 GO:0046983
Prci4g2634 330 FunFam Basic helix-loop-helix transcription factor 169 241 - -
Prci4g2634 330 CDD bHLH_AtBPE_like 162 238 - -
Prci4g2634 330 MobiDBLite consensus disorder prediction 119 155 - -
Prci4g2634 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983
Prci4g2634 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 238 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2634 Prci-Chr4 38652946 38655480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2634 1 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 43.657 6.05e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci4g2634 HLH 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2634 - - gmx:100796018 300.441