Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2624 ATGATTTCCAGAGTAAGCGGTGTCCCTTGGATGGACGAAAACAGAGAAGGAGACGACTCTACTGCTCCATCTTCATGGGCTAACATGAACGCCGGCATCAACATCGAGAAAAACCAAAACCAGAACCATCCTGGTTTTGTCCAGAACAAGGATGAGATGGGTTCTCTGTGTGCTCTCAAACCCATGCTTGAAATCGACGAGGACTGGTACATGGCCAACAATGGTATCCAAAATCAATCAGATATTATAAGAGACATCACTTTCTCTCCCAACTTCGCCGACCAAGACAGTCTATTGCTGAACCCAGTGGATTCGTCCACTCCATGTTCCCCATCTACCACCGTCTTCAACAATCTCGACCCATCTCAGGTTCCGTACTTTCTTCCTCACAAACCCAACTTGTCGTCTCTTCTCAATGTCGTCCCTGGTAATACTCCTTTAGACCATGGGTTTGGTGTGGGTTGCGATGTCGGGTTTCTTGAGCCTCAAGCTTCCAGCTCTAGCCTTCTGCGAGGCTTCACCGATTTCAGCTCAAATAACAACCAGATAATCCTTCCCAATTTATGCTCAGATCCACAAGTCCCAATGTCAGGTATATCGCAGGTAACCGATGGCAGTTTTACTGGTTTTCGGGGTTTCGAGGAAGGTCCTGGAAAACCGCTGTTCCTAAGTAGACCCAAGATTTTGAGACCCCTTGAATCGTTACCTCCATCGGGAGCACAACCCACTCTGTTTCAGAAGAGAGTGGCTTTTCGAAAGAAGCTCGCAAATAACGATACTGAGAGAGACGGAGGAAAGATTGAAATTGCAGAGGGGAACGAGAGGAAGAGGAAGATGGCTTGTTGGGAAGAAATGGAAGACGCTAGCCTTGACGGGTCAGCGTTGAATTACGATTCCGATGAGTTGACTGAGAATAGGACGGAGGAGAACGGGAAGAATGGAGGAAACAGCTCGAATGTGAACAGTACTGTGACTGGTGGCGATGGTGGGGATAAGAAGGGGAAGAAGAAGGGAATGCCTGCGAAGAATTTGATGGCTGAACGACGTCGTCGGAAGAAGCTCAATGATAGGCTGTATATGCTGAGGTCCGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATACTTGGCGATGCAATTGAGTACCTTAAAGAACTTCTACAAAGGATCAACGACATTCATAACGAATTGGAATCTGGCTCTTCACTAAGTACTCCCTCCACCACCAGCTTTCATCCTTTGACACCTACTCCAGCTGCATTACCCAACCGTATAAAGGATGAACTTTGCCCCAGCTCAATGCCAAGCCCGAACGGCCAACCTGCAAGGATTGAGGTTCGGGTGCGCGAAGGAAAAGCTGTAAATATCCACATGTTTTGTGGTCGCAAGCCGGGCCTCTTGCTTTCAACCATGAAGGCTCTGGACAGCCTTGGGTTAGAACTCCATCAAGCTGTTATTAGCTGTTTTAATGGCTTTGCCATGGATATCTTTCGAGCTGAGCAATGGAGGGATGGTCAAGATGCTCTTCATCCGGATCAAATCAAAGCAGCACTGTTGGAGTCAGCTGGCTACCATGGCGTGATCTAG 1590 0.478 MISRVSGVPWMDENREGDDSTAPSSWANMNAGINIEKNQNQNHPGFVQNKDEMGSLCALKPMLEIDEDWYMANNGIQNQSDIIRDITFSPNFADQDSLLLNPVDSSTPCSPSTTVFNNLDPSQVPYFLPHKPNLSSLLNVVPGNTPLDHGFGVGCDVGFLEPQASSSSLLRGFTDFSSNNNQIILPNLCSDPQVPMSGISQVTDGSFTGFRGFEEGPGKPLFLSRPKILRPLESLPPSGAQPTLFQKRVAFRKKLANNDTERDGGKIEIAEGNERKRKMACWEEMEDASLDGSALNYDSDELTENRTEENGKNGGNSSNVNSTVTGGDGGDKKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDIHNELESGSSLSTPSTTSFHPLTPTPAALPNRIKDELCPSSMPSPNGQPARIEVRVREGKAVNIHMFCGRKPGLLLSTMKALDSLGLELHQAVISCFNGFAMDIFRAEQWRDGQDALHPDQIKAALLESAGYHGVI 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2624 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 403 IPR036638 GO:0046983
Prci4g2624 529 CDD ACT_UUR-ACR-like 457 522 - -
Prci4g2624 529 SMART finulus 344 393 IPR011598 GO:0046983
Prci4g2624 529 MobiDBLite consensus disorder prediction 1 27 - -
Prci4g2624 529 MobiDBLite consensus disorder prediction 399 417 - -
Prci4g2624 529 MobiDBLite consensus disorder prediction 309 326 - -
Prci4g2624 529 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 224 525 - -
Prci4g2624 529 CDD bHLH_AtAMS_like 341 399 - -
Prci4g2624 529 Gene3D - 332 402 IPR036638 GO:0046983
Prci4g2624 529 Pfam Helix-loop-helix DNA-binding domain 345 387 IPR011598 GO:0046983
Prci4g2624 529 MobiDBLite consensus disorder prediction 399 419 - -
Prci4g2624 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Prci4g2624 529 FunFam BHLH transcription factor 334 402 - -
Prci4g2624 529 MobiDBLite consensus disorder prediction 303 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2624 Prci-Chr4 38522384 38526051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2624 59 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 48.312 8.34e-115 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci4g2624 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2624 - - cave:132174704 633.639