Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2623 ATGGCATCATCTGAGGTATCGATAAAGGGCAATAGTGTGAACGGGAAGGGGGAAGGTTTTTCTTCTGGTTATAGCAACCATGACGATGCTAGGAACGGTACAGAGGGTCAAAATGCTCAATCATTAACTGTGAAAGAAGCAGAAGCTGCGCTTTACAGAGAGCTATGGCATGCCTGTGCTGGCCCCCTTGTTACAGTCCCTCGGGAAGGAGAGAGAGTCTTCTATTTTCCTCAAGGACACATCGAGCAGGTTGAGGCGTCTACCAATCAGGTGGCGGACCAGCATATGCCCGTGTACGATCTACCTTCCAAAATCCTGTGTCGGGTGATCAACGTGTTGCTGAAGGCCGAGCCAGACACTGACGAGGTGTTTGCCCAGGTCACCTTGGTTCCTGAGACCGATCAAGATGAAAACGCCGTGGAGAAAGGGCCTCCGCCGCCTACGCCCCCTCGATTTCACGTGCATTCTTTCTGTAAAACTCTGACTGCCTCTGATACAAGTACTCACGGTGGCTTTTCGGTTCTGAGGCGACATGCTGATGAATGCCTACCTCCTTTGGACATGTCTAAGCAGCCACCTACCCAGGAGTTAGTGGCAAAGGATCTGCATGGCAGTGAGTGGCGATTCAGGCATATCTTTCGAGGTCAGCCTCGGAGACACTTACTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTTGTTGCAGGGGATGCCTTTATATTTCTCAGGGGGGAGAATGGGGAGCTTCGTGTTGGTGTCAGGCGTGCAATGAGACAGCAGGGTAATGTTCCATCCTCAGTGATATCCTGTCATAGCATGCATCTTGGTGTCCTTGCGACTGCTTGGCATGCTATCTCAACCGGCACCATGTTCACTGTGTATTACAAGCCCAGGACAAGTCCGGCTGAGTTTATTGTTCCATATGATCAATATATGGAGTCTCTCAAAAATAACTACTCAATAGGGATGCGATTCAAAATGAGGTTTGAAGGTGAGGAGGCTCCAGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGATCTCAACAGGTGGCCAAATTCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAATATACCTCGCCCCGACAGAGTTTCCCCTTGGAAAATAGAGCCTGCTGTTGCTCCCCCAGCTTTGAATCCGCTTCCAATGCCCAGGCCTAAGAGGCCTCGCGCAAACTTGGTTCCATTATCCCCCGACTCCTCTGTTCTTACTCGAGAAGCCTCTTCTAAAGTAAATAAAGACCCTTCACCAACAAGTGGGTTTCAAAGGGTCTTGCAAGGTCAAGAATACTCGACCTTGAGAGGCAATTTTGCGGAAAGCAATGAGTCAGTTACTGCAGAGAAGTCTGTTGCGTGGCCACCTGCAGTAGATGATGAAAAGATTGATATGGTTTCCACCTCAAGAAGGTACGAGTCAGAGAGCTGGATGTCAATGGGGAGGCATGAGCCAACTTACCCAGATCTACTATCAGGTTTTGGAGCCAGTGGAGATTCTTTTCGTCCGCCCTTGGCTGATCAGACTGGCCCTCTGGCTAGTCCTGCTAAAAATCGTTCATTGGACCCGGAAGGGAGGTTTAATGCACTGGCCAGTCCATGGCCTGTAGTGCCCTCTGGTCTATCACTAAACCTCCTGGACTCGAACATGAAGGGTTCTATTAATGGTGGGGATGTAACATATCAAGCCCCAGGGAATGTGAGGTATGGTGCATTTGGTGACTACCCAGTTCTCCATGGTCATAAAGTCCAGCAGTTACATGGGAATTCATTGATGCCACCACCATCTACAACACAATATGAGAGTTCTCGTTCAAGAGAGTTAATGTCAAAACCAGCATCAGCACAAACAAGTGAGCCTGCCAAGCCTAAAGATGGGGATTATAAGCTCTTTGGCTTCTCACTCATCAGTGGCTCCGTTGTACCAGAGCCATCTGTATCCCAAAGAAATGTGACTGGCGAATTACCTGGTCACATGCATCCTGCATCTTGCAAACCTCACGAAGGTGATCAGAAATCAGACCAACCGAGGGGCTCAAAACCAGCTGATGCAGTCGTTGATGATCCAGAGAAGTCGTTGCAAGGATCCCAGGCACATTTGAGAGAGGTTCATGCCAAACCACCCGGTGGTTCTGCAAGAAGTTGCACTAAAGTACACAAGAAGGGAATTGCACTTGGTAGGTCAGTGGACCTCACAAAGTTCAGCAACTATAATGAATTAGTTGTTGAACTAGACCACCTGTTTGAATTTGGTGGTGAATTGACGTCTCCAAGAAAGGATTGGCTTATTGTCTACACTGATGATGAGGGTGACATGATGCTTGTTGGGGATGATCCATGGCAGGAGTTCTGTGCCATGGTTCGCAAAATTTATATCTATCCCAAAGAGGAGATTCAAAAAATGAGCCCAGGTACACTGAGTTCAAGGAATGAAGAGAATCAATCAGCTAGCGAAGCTGCAGACGCCAAAGTTGAATGTCTGTTGCATCAGCCGTCTTCACTGCCTGATAATTCATAG 2559 0.4818 MASSEVSIKGNSVNGKGEGFSSGYSNHDDARNGTEGQNAQSLTVKEAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVLLKAEPDTDEVFAQVTLVPETDQDENAVEKGPPPPTPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISCHSMHLGVLATAWHAISTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADLNRWPNSKWRCLKVRWDETSNIPRPDRVSPWKIEPAVAPPALNPLPMPRPKRPRANLVPLSPDSSVLTREASSKVNKDPSPTSGFQRVLQGQEYSTLRGNFAESNESVTAEKSVAWPPAVDDEKIDMVSTSRRYESESWMSMGRHEPTYPDLLSGFGASGDSFRPPLADQTGPLASPAKNRSLDPEGRFNALASPWPVVPSGLSLNLLDSNMKGSINGGDVTYQAPGNVRYGAFGDYPVLHGHKVQQLHGNSLMPPPSTTQYESSRSRELMSKPASAQTSEPAKPKDGDYKLFGFSLISGSVVPEPSVSQRNVTGELPGHMHPASCKPHEGDQKSDQPRGSKPADAVVDDPEKSLQGSQAHLREVHAKPPGGSARSCTKVHKKGIALGRSVDLTKFSNYNELVVELDHLFEFGGELTSPRKDWLIVYTDDEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSRNEENQSASEAADAKVECLLHQPSSLPDNS 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2623 852 MobiDBLite consensus disorder prediction 603 631 - -
Prci4g2623 852 FunFam Auxin response factor 723 816 - -
Prci4g2623 852 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Prci4g2623 852 MobiDBLite consensus disorder prediction 390 437 - -
Prci4g2623 852 FunFam Auxin response factor 155 259 - -
Prci4g2623 852 SMART B3_2 157 259 IPR003340 GO:0003677
Prci4g2623 852 MobiDBLite consensus disorder prediction 413 437 - -
Prci4g2623 852 SUPERFAMILY DNA-binding pseudobarrel domain 153 286 IPR015300 -
Prci4g2623 852 MobiDBLite consensus disorder prediction 512 532 - -
Prci4g2623 852 MobiDBLite consensus disorder prediction 675 701 - -
Prci4g2623 852 SUPERFAMILY CAD & PB1 domains 730 804 - -
Prci4g2623 852 Gene3D - 320 391 - -
Prci4g2623 852 MobiDBLite consensus disorder prediction 657 730 - -
Prci4g2623 852 FunFam Auxin response factor 320 392 - -
Prci4g2623 852 CDD B3_DNA 155 257 IPR003340 GO:0003677
Prci4g2623 852 Pfam Auxin response factor 283 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci4g2623 852 Pfam AUX/IAA family 725 814 IPR033389 -
Prci4g2623 852 MobiDBLite consensus disorder prediction 600 641 - -
Prci4g2623 852 Gene3D - 724 816 - -
Prci4g2623 852 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Prci4g2623 852 MobiDBLite consensus disorder prediction 816 831 - -
Prci4g2623 852 MobiDBLite consensus disorder prediction 1 41 - -
Prci4g2623 852 MobiDBLite consensus disorder prediction 816 836 - -
Prci4g2623 852 ProSiteProfiles PB1 domain profile. 727 809 IPR000270 GO:0005515
Prci4g2623 852 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 816 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci4g2623 852 MobiDBLite consensus disorder prediction 390 407 - -
Prci4g2623 852 Gene3D - 154 259 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2623 Prci-Chr4 38513482 38518973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2623 1 837 B3 DNA Binding Superfamily AT5G62000 65.076 0.0 1088
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci4g2623 AUX_IAA 1.9e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2623 - - gmx:100815956 1330.08