Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2622 ATGCAAATTGACAATCTTGATGATTCGCCATTGTTCCGCCAACAGATCCAAAACTCGGAAGAAAGTGCTGACTTGTTAAGAGCCAGATGCTGGAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGGCTTGAAGGGGAATATGATGGGGACATCGCATTTGCAAATGCCCTTGAAACATTTGGTGGAGGGCCTAGTGATCCTTTTTTTGATGTTGTGGGAGGATCTGTAATGACCAAATTCACTGTTGCTTTGAGAGAAATCAGTACATATAAGGAACTGCTTCGGTCACAGGTGGAGCACATGCTGAATGACCGATTACTACACTTTCTCAATGTTGACATCCTTGATGCCAAGGAATCTCGAAAACGTTTTGACAAAGCCTCCGTTCAGTATGATCAGGCACGTGATAAGTTTATGTCTTTGAGGAAAAGTGCCAAGCTGGATACTGTTGCCGCCGTAGAAGAGGAATTGCACAATTCAAGGGACTCGTTTGAGGAAGCCCGTTTCAACCTGGTTAGTGCTCTCAACCATATTGAGGCCAAGAAGAGATTCGAGTTTTTGGAGGCTGTTCCTGGAATTATGGATGCTCATCTTCGATATTTTCAACAGGGATATCAATTATTCCAGCAGATGGAACCTTTCATTAGCGAGGTTCTGAGTATTGCACAACAGTCGAGAGAAAATTACAATACGGAGCAGATTTCCCTTCTTGAAAGAATTCAAGAGTACAAAAAACAAATTCATCAAGATAGTAAGCTCAACTCAAATGGTCCTTCTCCTAATAGAGACATGCAGGCCTTTTGCAGGATACCAAATGATGTGGCCGATGCTGTAATGGAATCTGCTGCAAATGGGAAGGTTCAAATTCTTCGACAAGGTTATCTGTCAAAGCGATCTTCCAATCTGAGGGGTGCTTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTATACTACCATCGCAAACCAGGGAACTGGTTGCAATCGCACGGCAGCAGCCAACCATCTGCAGCAAAAAATAATTCCACTGAAGCTAGTTCTGGGCTTTTGAGCCGTCTTGCTTATCACCATGCAGTTGTCGATGAAAAAACTGCCGCACGTCGTGCAGTGAACTTGTTAACATCGACAATCAAGATTGATGCTGAGCAGACGGATTTAAGATTTTGCTTCAGACTTATTTCGCCAACAAAGAACTTCACACTGCAGGCAGAAAATACGGCGGATCAAATGGATTGGGTTGAAAAGCTAACAGGAGTAATTGCCTCCTTGTTGAATGCCCAGACAATAGAAAAGCCTCTCTCAGCTGACTCCGAATGCAATGACGTTAACCCTGCCAGTAAAGGCAATTTGTCGGAAAATCCTCCAGTTGATGATCAGGCTGTAAAAGGTGAAAAGCCAATTGACGTTCTTAGAAAGGTGTGCGGGAATGACAAGTGTGCTGATTGCGGTAAACCTGATCCGGACTGGGCATCCTTAAACCTCGGTATTCTTATATGCATTGAATGCTCTGGTGTGCATCGTAATCTTGGTGTCCATATATCTAAAGTAAGATCGTTGACACTAGATGTGAAAGTCTGGGACGCTTCTGTTTTGGGCATGTTTCAGTCGCTGGGTAATCTCTTTGCAAACTCAATTTGGGAAGAGCTGTTGCATTCACCAAGCAATTCGCAAGTAGATGATATGCCTGTTTGTTCATTTAAGACCAAAAACAAGTTATTTCATGCAAAGAAACCAGAACATGACGACCCTATTTCATTGAAGGAGAGGTTCATTCACGCAAAGTATTTGGAGAAAGTCTTTGTTAACCGGAAGAAGAAAACCAATCGTGTCCAATCACTGGCTCACCAGGTGTGGGAAAGCATCTGTGCCAATGACAAGAGAGCAGTGTACCGACACATTGTCAAGTCAGATGTGGATCTCAATGCTATCAGTGAGCAAATATCATATGGTGTGTCTTCTTGTCTCTCAACTCCATTAGCTGGATTCTTGTTAATGAGTGGCTTAACAGGCAATACTGAGGCGTCTTCTTCAAGTAATATAGGCTCGTCATCAAAAAAAGAAAATCAGCTTACCGAGTTGCAACCCAAAAACACAGAAAATCAGCCAGTAGAGGATAGACAAGATTGTTCTAGTTCTCGTGTGCTTCATCAGGCATGTCTAACTGCCGATTCAAGCATGCTGGAGCTCCTTCTTCAGTATGGTGCAGATATAAATGCTTCAGACTCAAGAGGTCAGACACCACTGCATTGTTGTATGATCAATGGCAAGAGCGCAGCTGCAAAATTGCTAGTGATGAGGGGGGCCAATCCTCACTCTGTAGATAAAGAAGGCAATACTCCTATTGAGCTTGCTTCAAGATCCGAATCTTTTGGCAGTGATGTTTTCTCTCTCTTAACAAGCAGATAG 2415 0.4311 MQIDNLDDSPLFRQQIQNSEESADLLRARCWKFYKGCRKYTEGLEGEYDGDIAFANALETFGGGPSDPFFDVVGGSVMTKFTVALREISTYKELLRSQVEHMLNDRLLHFLNVDILDAKESRKRFDKASVQYDQARDKFMSLRKSAKLDTVAAVEEELHNSRDSFEEARFNLVSALNHIEAKKRFEFLEAVPGIMDAHLRYFQQGYQLFQQMEPFISEVLSIAQQSRENYNTEQISLLERIQEYKKQIHQDSKLNSNGPSPNRDMQAFCRIPNDVADAVMESAANGKVQILRQGYLSKRSSNLRGAWKRRYFVLDSRGMLYYHRKPGNWLQSHGSSQPSAAKNNSTEASSGLLSRLAYHHAVVDEKTAARRAVNLLTSTIKIDAEQTDLRFCFRLISPTKNFTLQAENTADQMDWVEKLTGVIASLLNAQTIEKPLSADSECNDVNPASKGNLSENPPVDDQAVKGEKPIDVLRKVCGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDASVLGMFQSLGNLFANSIWEELLHSPSNSQVDDMPVCSFKTKNKLFHAKKPEHDDPISLKERFIHAKYLEKVFVNRKKKTNRVQSLAHQVWESICANDKRAVYRHIVKSDVDLNAISEQISYGVSSCLSTPLAGFLLMSGLTGNTEASSSSNIGSSSKKENQLTELQPKNTENQPVEDRQDCSSSRVLHQACLTADSSMLELLLQYGADINASDSRGQTPLHCCMINGKSAAAKLLVMRGANPHSVDKEGNTPIELASRSESFGSDVFSLLTSR 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2622 804 ProSiteProfiles Ankyrin repeat region circular profile. 713 744 - -
Prci4g2622 804 Gene3D - 282 437 IPR011993 -
Prci4g2622 804 PANTHER CENTAURIN/ARF 5 802 IPR045258 GO:0005096
Prci4g2622 804 MobiDBLite consensus disorder prediction 438 456 - -
Prci4g2622 804 SMART PH_update 290 426 IPR001849 -
Prci4g2622 804 CDD BAR_SFC_plant 15 215 IPR035670 -
Prci4g2622 804 ProSiteProfiles Ankyrin repeat profile. 746 778 IPR002110 GO:0005515
Prci4g2622 804 Gene3D - 682 794 IPR036770 -
Prci4g2622 804 SUPERFAMILY PH domain-like 290 446 - -
Prci4g2622 804 ProSiteProfiles Ankyrin repeat profile. 713 745 IPR002110 GO:0005515
Prci4g2622 804 SUPERFAMILY ArfGap/RecO-like zinc finger 468 606 IPR037278 -
Prci4g2622 804 MobiDBLite consensus disorder prediction 438 462 - -
Prci4g2622 804 SUPERFAMILY BAR/IMD domain-like 4 312 IPR027267 -
Prci4g2622 804 ProSiteProfiles Ankyrin repeat region circular profile. 746 778 - -
Prci4g2622 804 Pfam BAR domain of APPL family 4 233 IPR004148 GO:0005515|GO:0005737
Prci4g2622 804 ProSiteProfiles PH domain profile. 289 424 IPR001849 -
Prci4g2622 804 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 450 612 - -
Prci4g2622 804 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Prci4g2622 804 Gene3D Arfaptin homology (AH) domain/BAR domain 3 250 IPR027267 -
Prci4g2622 804 ProSiteProfiles ARF GTPase-activating proteins domain profile. 467 611 IPR001164 GO:0005096
Prci4g2622 804 CDD PH_ACAP 292 428 - -
Prci4g2622 804 CDD ArfGap 470 598 - -
Prci4g2622 804 PRINTS HIV Rev interacting protein signature 479 498 IPR001164 GO:0005096
Prci4g2622 804 PRINTS HIV Rev interacting protein signature 498 515 IPR001164 GO:0005096
Prci4g2622 804 PRINTS HIV Rev interacting protein signature 521 542 IPR001164 GO:0005096
Prci4g2622 804 Coils Coil 227 247 - -
Prci4g2622 804 MobiDBLite consensus disorder prediction 677 712 - -
Prci4g2622 804 Pfam Ankyrin repeats (3 copies) 718 801 IPR002110 GO:0005515
Prci4g2622 804 SMART arf_gap_3 467 611 IPR001164 GO:0005096
Prci4g2622 804 Pfam Putative GTPase activating protein for Arf 470 606 IPR001164 GO:0005096
Prci4g2622 804 SUPERFAMILY Ankyrin repeat 632 791 IPR036770 -
Prci4g2622 804 SMART ANK_2a 713 742 IPR002110 GO:0005515
Prci4g2622 804 SMART ANK_2a 746 775 IPR002110 GO:0005515
Prci4g2622 804 Coils Coil 118 138 - -
Prci4g2622 804 Gene3D Arf GTPase activating protein 450 613 IPR038508 -
Prci4g2622 804 Pfam PH domain 291 422 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2622 Prci-Chr4 38467643 38479523 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2622 466 614 C2H2 Transcription Factor Family AT4G21160 38.000 1.91e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2622 K12489 - gmx:100797073 993.801