Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2620 ATGCAAATTGACAATCTTGATGATTCGCCATTGTTCCGCCAACAGATCCAAAACTCGGAAGAAAGTGCTGACTTGTTAAGAGCCAGATGCTGGAAGTTCTACAAAGGATGTCGAAAGTACACGGAAGGGCTTGAAGGGGAATATGATGGGGACATCGCATTTGCAAATGCCCTTGAAACATTTGGTGGAGGGCCTAGTGATCCTTTTTTTGATGTTGTGGGAGGATCTGTAATGACCAAATTCACTGTTGCTTTGAGAGAAATCAGTACATATAAGGAACTGCTTCGGTCACAGGTGGAGCACATGCTGAATGACCGATTACTACACTTTCTCAATGTTGACATCCTTGATGCCAAGGAATCTCGAAAACGTTTTGACAAAGCCTCCGTTCAGTATGATCAGGCACGTGATAAGTTTATGTCTTTGAGGAAAAGTGCCAAGCTGGATACTGTTGCCGCCGTAGAAGAGGAATTGCACAATTCAAGGGACTCGTTTGAGGAAGCCCGTTTCAACCTGGTTAGTGCTCTCAACCATATTGAGGCCAAGAAGAGATTCGAGTTTTTGGAGGCTGTTCCTGGAATTATGGATGCTCATCTTCGATATTTTCAACAGGGATATCAATTATTCCAGCAGATGGAACCTTTCATTAGCGAGGTTCTGAGTATTGCACAACAGTCGAGAGAAAATTACAATACGGAGCAGATTTCCCTTCTTGAAAGAATTCAAGAGTACAAAAAACAAATTCATCAAGATAGTAAGCTCAACTCAAATGGTCCTTCTCCTAATAGAGACATGCAGGCCTTTTGCAGGATACCAAATGATGTGGCCGATGCTGTAATGGAATCTGCTGCAAATGGGAAGGTTCAAATTCTTCGACAAGGTTATCTGTCAAAGCGATCTTCCAATCTGAGGGGTGCTTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTATACTACCATCGCAAACCAGGGAACTGGTTGCAATCGCACGGCAGCAGCCAACCATCTGCAGCAAAAAATAATTCCACTGAAGCTAGTTCTGGGCTTTTGAGCCGTCTTGCTTATCACCATGCAGTTGTCGATGAAAAAACTGCCGCACGTCGTGCAGTGAACTTGTTAACATCGACAATCAAGATTGATGCTGAGCAGACGGATTTAAGATTTTGCTTCAGACTTATTTCGCCAACAAAGAACTTCACACTGCAGGCAGAAAATACGGCGGATCAAATGGATTGGGTTGAAAAGCTAACAGGAGTAATTGCCTCCTTGTTGAATGCCCAGACAATAGAAAAGCCTCTCTCAGCTGACTCCGAATGCAATGACGTTAACCCTGCCAGTAAAGGCAATTTGTCGGAAAATCCTCCAGTTGATGATCAGGTAGTGGCTGAAGCACGTGCATCTAAGAACTTCACCTCGAATATTTCCTCTGCTCTAGCTAAAAGTTTGCAATCGCGTCAACAGGCTGTAAAAGGTGAAAAGCCAATTGACGTTCTTAGAAAGGTGTGCGGGAATGACAAGTGTGCTGATTGCGGTAAACCTGATCCGGACTGGGCATCCTTAAACCTCGGTATTCTTATATGCATTGAATGCTCTGGTGTGCATCGTAATCTTGGTGTCCATATATCTAAAGTAAGATCGTTGACACTAGATGTGAAAGTCTGGGACGCTTCTGTTTTGGGCATGTTTCAGTCGCTGGGTAATCTCTTTGCAAACTCAATTTGGGAAGAGCTGTTGCATTCACCAAGCAATTCGCAAGTAGATGATATGCCTGTTTGTTCATTTAAGACCAAAAACAAGTTATTTCATGCAAAGAAACCAGAACATGACGACCCTATTTCATTGAAGGAGAGGTTCATTCACGCAAAGTATTTGGAGAAAGTCTTTGTTAACCGGAAGAAGAAAACCAATCGTGTCCAATCACTGGCTCACCAGGTGTGGGAAAGCATCTGTGCCAATGACAAGAGAGCAGTGTACCGACACATTGTCAAGTCAGATGTGGATCTCAATGCTATCAGTGAGCAAATATCATATGGCAATACTGAGGCGTCTTCTTCAAGTAATATAGGCTCGTCATCAAAAAAAGAAAATCAGCTTACCGAGTTGCAACCCAAAAACACAGAAAATCAGCCAGTAGAGGATAGACAAGATTGTTCTAGTTCTCGTGTGCTTCATCAGGCATGTCTAACTGCCGATTCAAGCATGCTGGAGCTCCTTCTTCAGTATGGTGCAGATATAAATGCTTCAGACTCAAGAGGTCAGACACCACTGCATTGTTGTATGATCAATGGCAAGAGCGCAGCTGCAAAATTGCTAGTGATGAGGGGGGCCAATCCTCACTCTGTAGATAAAGAAGGCAATACTCCTATTGAGCTTGCTTCAAGATCCGAATCTTTTGGCAGTGATGTTTTCTCTCTCTTAACAAGCAGATAG 2439 0.4321 MQIDNLDDSPLFRQQIQNSEESADLLRARCWKFYKGCRKYTEGLEGEYDGDIAFANALETFGGGPSDPFFDVVGGSVMTKFTVALREISTYKELLRSQVEHMLNDRLLHFLNVDILDAKESRKRFDKASVQYDQARDKFMSLRKSAKLDTVAAVEEELHNSRDSFEEARFNLVSALNHIEAKKRFEFLEAVPGIMDAHLRYFQQGYQLFQQMEPFISEVLSIAQQSRENYNTEQISLLERIQEYKKQIHQDSKLNSNGPSPNRDMQAFCRIPNDVADAVMESAANGKVQILRQGYLSKRSSNLRGAWKRRYFVLDSRGMLYYHRKPGNWLQSHGSSQPSAAKNNSTEASSGLLSRLAYHHAVVDEKTAARRAVNLLTSTIKIDAEQTDLRFCFRLISPTKNFTLQAENTADQMDWVEKLTGVIASLLNAQTIEKPLSADSECNDVNPASKGNLSENPPVDDQVVAEARASKNFTSNISSALAKSLQSRQQAVKGEKPIDVLRKVCGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDASVLGMFQSLGNLFANSIWEELLHSPSNSQVDDMPVCSFKTKNKLFHAKKPEHDDPISLKERFIHAKYLEKVFVNRKKKTNRVQSLAHQVWESICANDKRAVYRHIVKSDVDLNAISEQISYGNTEASSSSNIGSSSKKENQLTELQPKNTENQPVEDRQDCSSSRVLHQACLTADSSMLELLLQYGADINASDSRGQTPLHCCMINGKSAAAKLLVMRGANPHSVDKEGNTPIELASRSESFGSDVFSLLTSR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2620 812 MobiDBLite consensus disorder prediction 438 456 - -
Prci4g2620 812 PRINTS HIV Rev interacting protein signature 507 526 IPR001164 GO:0005096
Prci4g2620 812 PRINTS HIV Rev interacting protein signature 526 543 IPR001164 GO:0005096
Prci4g2620 812 PRINTS HIV Rev interacting protein signature 549 570 IPR001164 GO:0005096
Prci4g2620 812 MobiDBLite consensus disorder prediction 683 720 - -
Prci4g2620 812 SMART PH_update 290 426 IPR001849 -
Prci4g2620 812 CDD BAR_SFC_plant 15 215 IPR035670 -
Prci4g2620 812 Gene3D - 282 437 IPR011993 -
Prci4g2620 812 SUPERFAMILY PH domain-like 290 446 - -
Prci4g2620 812 CDD ArfGap 498 626 - -
Prci4g2620 812 SMART ANK_2a 721 750 IPR002110 GO:0005515
Prci4g2620 812 SMART ANK_2a 754 783 IPR002110 GO:0005515
Prci4g2620 812 Pfam BAR domain of APPL family 4 233 IPR004148 GO:0005515|GO:0005737
Prci4g2620 812 Pfam Ankyrin repeats (3 copies) 726 809 IPR002110 GO:0005515
Prci4g2620 812 ProSiteProfiles Ankyrin repeat profile. 754 786 IPR002110 GO:0005515
Prci4g2620 812 ProSiteProfiles PH domain profile. 289 424 IPR001849 -
Prci4g2620 812 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Prci4g2620 812 SUPERFAMILY BAR/IMD domain-like 4 312 IPR027267 -
Prci4g2620 812 Gene3D - 690 802 IPR036770 -
Prci4g2620 812 ProSiteProfiles Ankyrin repeat profile. 721 753 IPR002110 GO:0005515
Prci4g2620 812 SUPERFAMILY ArfGap/RecO-like zinc finger 496 634 IPR037278 -
Prci4g2620 812 CDD PH_ACAP 292 428 - -
Prci4g2620 812 Gene3D Arfaptin homology (AH) domain/BAR domain 3 250 IPR027267 -
Prci4g2620 812 SMART arf_gap_3 495 639 IPR001164 GO:0005096
Prci4g2620 812 ProSiteProfiles Ankyrin repeat region circular profile. 754 786 - -
Prci4g2620 812 MobiDBLite consensus disorder prediction 438 458 - -
Prci4g2620 812 SUPERFAMILY Ankyrin repeat 658 799 IPR036770 -
Prci4g2620 812 Coils Coil 227 247 - -
Prci4g2620 812 Pfam PH domain 291 422 IPR001849 -
Prci4g2620 812 ProSiteProfiles Ankyrin repeat region circular profile. 721 752 - -
Prci4g2620 812 Gene3D Arf GTPase activating protein 477 641 IPR038508 -
Prci4g2620 812 ProSiteProfiles ARF GTPase-activating proteins domain profile. 495 639 IPR001164 GO:0005096
Prci4g2620 812 Coils Coil 118 138 - -
Prci4g2620 812 Pfam Putative GTPase activating protein for Arf 498 634 IPR001164 GO:0005096
Prci4g2620 812 PANTHER CENTAURIN/ARF 5 810 IPR045258 GO:0005096
Prci4g2620 812 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 477 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2620 Prci-Chr4 38467643 38479523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2620 494 642 C2H2 Transcription Factor Family AT4G21160 38.000 1.88e-20 91.7