Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2616 ATGCCTTTTGAAATAATGGATCAGAGGGCTGTATCTGCCTCATCACACTTTTTTGATGACATTTCCTTTTGCTCTGAGAAGAATGCTGGATTGCAGAGGCCAAAATCTATTCGTGAACACTACCATCAAGGAAAGAATGGAATGACAGCATCACCTGGCAGCATTTTGAATGCTTTGTCTCCTCGGGAAATTAGTGCAAAGACTAGGTGGTCAAAGTCAACAACAGGTCTGTCTGGAGAAACCATAGAAAAGCTGCATGTTGGTGAAGAAGGCATTGTTGATACGTTTGAAGCCTCCAAGGAACCATTAAATCATCGTCCCAGGTCTCAGTCTAATGTGCTTACGCAGCCAGCATCCAGCCCATATGGTTTAATTGGCAATAAGATCATTACTAATGCTGCCTCACGTGAAAGTAGTTTATTCTCAAGCTCACTATCTGAGATATTTACCCGGAAGTTGAGGTTAACGGAAAACGATGTTCTGCCTCAACAGCCTGTTACTGTTGGTTCACTTCCTGAGGAGGAACCATATAAATCTCTTGAAGAAATTGAGGCCGACACTATCGGAAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTCACTGATGACTTAGGATCCAATACTCTTACCAGAACTGGTGATGACCTGGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGCTTGAAGGTGATGAACATCTGACTTCAGGAAAAAGGCCCAGTGGTCCAGATGGAGATCTTGGTTTCTTTGGAGGCTTTAAAGGGAAACTTCCTTTTGGTGAACACCCTTCTAGAACACTTTTTGTTAGAAACATCAACAGCAATGTTGAAGATTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGTGATGTCCGAACCACTTATACTGCTTGCAAGCATCGTGGATTTGTTATGATTTCTTATCATGACATAAGAGCTGCACAAAATGCAATGAAAGCTCTTCAAAACAGGTCATTGAGGTCTAGGAGACTTGACATACATTATTCCATACCGAAGGTAAATGCTCCGGAGAAGGATATTAGCCATGGTACACTGCTTCTATCTGGTCTTGATTCTTCTGTTTCACATGATGAACTTCTACAAATTTTTGGATTTTATGGAGAAATCAAAGAAATTTATGAATCTCCAGAAATGAATTATGACAAATTCATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCTCTGAACAAGAGTGAAATTGCTGGGAAGCAGATCAAGCTTGAAGCCAGTCATCCTAGGGGTTCAAATGGAACATGTTTGATGCAGCAGTCTCAGAAGGGGCAGAATGAGTCTGATCTTAGTCAGAGCATGGGTGACAACTTATCATTAAGACAGAGTGTAATAACATCTTCTGGAGTAATTGCATCTAGCTGCTTGGACAATGGATCTGATCATGGATTTCCAGCAGCAATGCGACAAACTATGGATGCCTTATCACTGAATGTATTCTCACATGTGAATTCTGGCATTCACAACACAGTGAGAGCACCATCAATTCCTAGATTCCATCCTCATTCCCTTCCTGAGTATCATGATGGTTTAGCTTGTGGCAGTCTTTACAACTTTTCAAGAACCTTTAGCAATGTATCTGGTAATATGAGTCCAGGAGTGACAGATAGCTCCGACAGCAGGCACATGGGATTCAGTTCAATTGGGAAAGTGACGGACTTTAATGGAGGAGGAAATGGGAGCCTTCCTAATCATGGGCTTTACCACATGTGGAATGGATCGAATTTGCACCAGCAAACTCCACCAGGTCCAATGGTTTGGCCGAAAACACCATCATTTGTCAATGGTGCTTGTGCTCCTTGTCTTCAACAGATGCCCGGCTTTCCCAGATCATCATCTCTTATGCTGAGAGCATCGCATATAGACCACCATGTTGGATCAGCACCAGTTGTTACAGCTTCCCCATGGGATAGACAACATTCTTATTTGCCAGAGTCCCCTGAATCCTCTGGTTTTCACATGGGTTCTCTTGGGAGTACCGGTTTTCCTGGTACATGGCAATTGCATCCTCCAGACTTTTCTTCTCACAATATGTTTCCTCATGTTGGTGGAAATGGCATGGATTTGTCACCCAATGCTGGGCAGGGCTCCCCAAATCCACATGTTTTCCCTGGGAGACATCCCATGGCTTCAATGTCCACCAATGACAGGATGAGAAACCTCTATCACCGTAGAAGTGATGCTAACACTAATAGTGCTGACAAAAAGCAATTTGAGCTTGACCTAAGTCGTATATTGAATGGAGAAGACTCACGAACAACACTTATGATTAAGAATATTCCCAACAAGTATACTTCAAAAATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTTTGTATTTACCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCCTTCATCAACATGACTGATCCTAGTCAAATCATTCCCTTTCACAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAGAAGGTGGCTTCACTTGCCTATGCTCGAATTCAGGGAAAAGCTGCTCTTATTGCACATTTCCAAAACTCGAGCCTGATGAATGAGGATAAACGTTGCCGCCCTATTCTCTTCCATACAGAGGGCCCAAATGCTGGCGATCCGGAGCCTTTCCCCATGGGTGTTAATATGAGATTGAGGCCTGGAAAATCCCGTACTAGTAGTAGTAACGAGGAGAATCGTGTCTCGATGAGCTCTTTGGCTTCGGCTAGCGTAGAGGAGTCTTCTAATGGAATAAGTTCTTCAATGGGCTCTTCAAAGAACTCTGACTGA 2844 0.4279 MPFEIMDQRAVSASSHFFDDISFCSEKNAGLQRPKSIREHYHQGKNGMTASPGSILNALSPREISAKTRWSKSTTGLSGETIEKLHVGEEGIVDTFEASKEPLNHRPRSQSNVLTQPASSPYGLIGNKIITNAASRESSLFSSSLSEIFTRKLRLTENDVLPQQPVTVGSLPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTDDLGSNTLTRTGDDLEDFDLFSSGGGMELEGDEHLTSGKRPSGPDGDLGFFGGFKGKLPFGEHPSRTLFVRNINSNVEDSELKALFEQYGDVRTTYTACKHRGFVMISYHDIRAAQNAMKALQNRSLRSRRLDIHYSIPKVNAPEKDISHGTLLLSGLDSSVSHDELLQIFGFYGEIKEIYESPEMNYDKFIEFYDVRAAEAALRALNKSEIAGKQIKLEASHPRGSNGTCLMQQSQKGQNESDLSQSMGDNLSLRQSVITSSGVIASSCLDNGSDHGFPAAMRQTMDALSLNVFSHVNSGIHNTVRAPSIPRFHPHSLPEYHDGLACGSLYNFSRTFSNVSGNMSPGVTDSSDSRHTXGFSSIGKVTDFNGGGNGSLPNHGLYHMWNGSNLHQQTPPGPMVWPKTPSFVNGACAPCLQQMPGFPRSSSLMLRASHIDHHVGSAPVVTASPWDRQHSYLPESPESSGFHMGSLGSTGFPGTWQLHPPDFSSHNMFPHVGGNGMDLSPNAGQGSPNPHVFPGRHPMASMSTNDRMRNLYHRRSDANTNSADKKQFELDLSRILNGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPSQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGVNMRLRPGKSRTSSSNEENRVSMSSLASASVEESSNGISSSMGSSKNSD 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2616 948 MobiDBLite consensus disorder prediction 430 453 - -
Prci4g2616 948 MobiDBLite consensus disorder prediction 421 453 - -
Prci4g2616 948 MobiDBLite consensus disorder prediction 696 729 - -
Prci4g2616 948 Gene3D - 352 452 IPR012677 -
Prci4g2616 948 FunFam Protein MEI2-like 1 353 449 - -
Prci4g2616 948 Pfam RNA recognition motif 2 771 867 IPR007201 -
Prci4g2616 948 FunFam MEI2-like protein 5 isoform 2 258 352 - -
Prci4g2616 948 Gene3D - 258 351 IPR012677 -
Prci4g2616 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Prci4g2616 948 MobiDBLite consensus disorder prediction 882 948 - -
Prci4g2616 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Prci4g2616 948 SUPERFAMILY RNA-binding domain, RBD 773 858 IPR035979 GO:0003676
Prci4g2616 948 SMART rrm1_1 270 338 IPR000504 GO:0003723
Prci4g2616 948 SMART rrm1_1 355 423 IPR000504 GO:0003723
Prci4g2616 948 SMART rrm1_1 773 849 IPR000504 GO:0003723
Prci4g2616 948 MobiDBLite consensus disorder prediction 225 249 - -
Prci4g2616 948 PANTHER RNA RECOGNITION MOTIF-CONTAINING 111 931 - -
Prci4g2616 948 MobiDBLite consensus disorder prediction 906 948 - -
Prci4g2616 948 CDD RRM1_MEI2_like 268 343 IPR034453 -
Prci4g2616 948 CDD RRM3_MEI2_like 774 859 IPR034454 -
Prci4g2616 948 SUPERFAMILY RNA-binding domain, RBD 266 429 IPR035979 GO:0003676
Prci4g2616 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Prci4g2616 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 421 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2616 Prci-Chr4 38409982 38418050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2616 264 428 Eukaryotic Initiation Factors Gene Family AT3G16380 24.194 4.43e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2616 - - pcin:129308788 1837.39