Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2574 ATGAAGAAATCGAGCTCATCTACTTTACCATCAAAACCCACATGGGTTCTTCCCCATCGGACCCAAATCCTCACAGAGCTTTACACATTGGGCAGGAAACTTGGTCAAGGTCAATTTGGTACTACTTTCCTTTGTACGGAGAAGTGCACAGGTCGCAGATATGCCTGCAAGTCAATTCCGAAGCGCAAGCTCATCTGCAAAGAGGATTATGATGATGTTTGGAGAGAGATTCAGATAATGCACCACTTGTCCGAACATCCTTATGTGGTAAGAATTCATGGTACCTATGAGGACTATGTTTCTGTTCACTTGGTGATGGAGCTGTGCGAAGGTGGAGAGTTGTTCGATAGGATTGTGCAGAAAGGGCATTACAGTGAGAGGCAAGCGGCCAAGATAATCCGAACCATCGTTGAAGTTGTAGAAGCTTGTCATTCTCTTGGGGTTATGCACAGAGATCTTAAACCAGAGAACTTCTTATTCGATAGCGTCGAAGAGGATGCCAAACTTAAGGCAACTGATTTCGGGCTGTCTGTTTTTTACAAGCCAGGTGAAACATTTTCTGATGTTGTTGGAAGCCCATACTATGTTGCACCAGAGGTGTTACGCAAACATTATGGACCTGAATCAGATGTGTGGAGTGCAGGGGTTATTTTGTACATTTTACTTAGTGGGGTGCCACCATTTTGGGCCGAAACTGAAACAGGGATCTTCCGACAGATTTTGGAAGGAAAAATTGATTTTCAGTCTGAACCATGGCCTAGCATTTCAGACAGTGCAAAGGATCTAATTAGAAAAATGCTTGAGCAAAATCCCAAAAAAAGGCTTACAGCCCATGAAGTACTCCGCCACCCGTGGATTGTTGATGACAACATTGCACCAGATAAACCTCTTGATTCTGCTGTTTTATCACGCTTGAAGCAGTTCTCTGCAATGAATAAGCTCAAAAAGATGGCTTTGCGAGTCATAGCTGAGAGGCTCTCTGAGGAAGAAATAGGCGGACTGAGGGAGTTATTCAAAATGATCGACACAGACAACAGCGGAAACATAACGTTTGACGAGCTAAAAGATGGTTTAAGGCGAGTAGGATCCGACCTTATGGAGTCTGAAATCAAGGATCTTATGGATGCAGCTGATATTGATAATAGTGGGACCATTAGTTATGGCGAATTCATTGCTGCTACTATACACTTGAATAAGCTGGAGAGGGAAGAGAATCTGCTATCAGCTTTCTCCTATTTTGACAAAGATGGAAGTGGCTACATAACTATTGATGAGATTCAACAGGCTTGTAAAGAGTTTGGTCTAAATGATTTCCCTATAGATGAAATAATCAAGGAAATCGATCAGGATAATGATGGTCAAATAGATTATGGGGAATTTGCTGCGATGATGAGAAAGGGTAATGGAGGAGGGGTTGGAAGGCGAACAATGAGGAAGACTTTGAATTTCAGGGATGCTTTTGGATTGATAGGCAATGGTTCTAATGATTCTCAGCTTTAG 1500 0.4253 MKKSSSSTLPSKPTWVLPHRTQILTELYTLGRKLGQGQFGTTFLCTEKCTGRRYACKSIPKRKLICKEDYDDVWREIQIMHHLSEHPYVVRIHGTYEDYVSVHLVMELCEGGELFDRIVQKGHYSERQAAKIIRTIVEVVEACHSLGVMHRDLKPENFLFDSVEEDAKLKATDFGLSVFYKPGETFSDVVGSPYYVAPEVLRKHYGPESDVWSAGVILYILLSGVPPFWAETETGIFRQILEGKIDFQSEPWPSISDSAKDLIRKMLEQNPKKRLTAHEVLRHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLRELFKMIDTDNSGNITFDELKDGLRRVGSDLMESEIKDLMDAADIDNSGTISYGEFIAATIHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKEFGLNDFPIDEIIKEIDQDNDGQIDYGEFAAMMRKGNGGGVGRRTMRKTLNFRDAFGLIGNGSNDSQL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2574 499 SMART efh_1 439 467 IPR002048 GO:0005509
Prci4g2574 499 SMART efh_1 333 361 IPR002048 GO:0005509
Prci4g2574 499 SMART efh_1 405 433 IPR002048 GO:0005509
Prci4g2574 499 SMART efh_1 369 397 IPR002048 GO:0005509
Prci4g2574 499 Pfam EF-hand domain pair 334 394 IPR002048 GO:0005509
Prci4g2574 499 Pfam EF-hand domain pair 404 465 IPR002048 GO:0005509
Prci4g2574 499 ProSitePatterns EF-hand calcium-binding domain. 342 354 IPR018247 -
Prci4g2574 499 ProSiteProfiles EF-hand calcium-binding domain profile. 329 364 IPR002048 GO:0005509
Prci4g2574 499 FunFam Calcium-dependent protein kinase SK5 114 298 - -
Prci4g2574 499 Pfam Protein kinase domain 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g2574 499 Gene3D - 327 398 - -
Prci4g2574 499 Gene3D - 399 497 - -
Prci4g2574 499 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Prci4g2574 499 FunFam Calcium-dependent protein kinase SK5 399 495 - -
Prci4g2574 499 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Prci4g2574 499 SUPERFAMILY EF-hand 325 465 IPR011992 -
Prci4g2574 499 CDD STKc_CAMK 28 285 - -
Prci4g2574 499 CDD EFh 406 465 IPR002048 GO:0005509
Prci4g2574 499 SUPERFAMILY Protein kinase-like (PK-like) 12 305 IPR011009 -
Prci4g2574 499 FunFam calcium-dependent protein kinase SK5 323 395 - -
Prci4g2574 499 ProSitePatterns Protein kinases ATP-binding region signature. 34 67 IPR017441 GO:0005524
Prci4g2574 499 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
Prci4g2574 499 FunFam Calcium-dependent protein kinase 1 30 113 - -
Prci4g2574 499 Gene3D Transferase(Phosphotransferase) domain 1 115 326 - -
Prci4g2574 499 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g2574 499 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Prci4g2574 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Prci4g2574 499 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci4g2574 499 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Prci4g2574 499 ProSiteProfiles EF-hand calcium-binding domain profile. 440 470 IPR002048 GO:0005509
Prci4g2574 499 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 460 - -
Prci4g2574 499 CDD EFh 334 393 IPR002048 GO:0005509
Prci4g2574 499 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2574 Prci-Chr4 38064273 38069073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2574 10 496 EF-hand Containing Proteins AT1G35670 78.004 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Prci4g2574 Pkinase 1.2e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2574 K13412 - qsa:O6P43_030287 891.338