Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2545 ATGGCAGCAGCTCTACTTCGGAGAACCAGTATTTCCCACAATGCCCGCCGCTTCAAGTTCGCTACTTCTTGGTGTCTTAGTGAGGCGTTGACTCAGCATTTTCCGATCGATAAGTCTGTGAATGAAAATGCTATTCGCAGAGTTTCAAAGGGCTTTTCGTTTTACTCCCAGCTTGCCGGTGGTGGTGGACTCCCATCGTTTATGCGTGGAGCTGTATTCTGGGAATCTGGCAAGCCTCTCTCCATCGAGGAATTCCACATCCCTCGCCCCAAGGCTGGAGAAGTTCTCGTCAGAACCAAGGGTTGTGGAGTATGCCACTCCGATCTCCACGTTATAAAGGACGAAATTCCTTTTTCCAGTCCTTGCGTGCTGGGACATGAGATAACTGGCGAAATTCTTGAACATGGACCGCTCACAGATGATAAAACAAAACAAAGGCTTCCAGTTGGATCTCGAGTCGTTGGTTCCTTCATTATGCCTTGTGGCAACTGTTCTTATTGTTCAAAGGGGCATGATGATTTATGTGAAGCTTTCTTTGCTTATAACCGGGCAAAAGGAACCCTCTATGACGGTGAAACTCGGCTGTTTCTTCGCAGCAGTGGAAAACCAGTCTACATGTATAGTATGGGAGGGCTTGCTGAATACTGTGTGGTGCCAGCAAATGCGTTGACAGTATTACCAGACTCATTGCCATACACAGAGTCTGCAATACTAGGATGTGCTGTCTTTACTGCGTATGGAGCAATGGCCCATGCGGCTGAGGTGCGTCCAGGGGACTCTGTTGCTGTTATCGGAACAGGGGGTGTTGGTTCTAGCTGTTTGCAGATAGCTAGAGCATTTGGTGCTTCTGAAATTATTGCTGTGGATGTTCAGGATGAAAAGCTAGAGAAAGCAAAAACATTTGGTGCTACTCACACCGTGAATGCAGCACGAGAAGATCCAATTGGAAAGATAATTGAAATAACTGGTGGAAAAGGTGTTGACGTTGCTGTGGAAGCCTTGGGAAAACCACAGACGTTTTCCCAGTGCACGCAAAGTGTGAAGGATGGAGGAAAAGCTGTGATGATTGGACTAGCAAAAGCTGGTGCTGTTGGACAAATCGATATAAATCGCCTTGTTCGTAAAAAGATAAAAGTTCTGGGATCATATGGAGGTAGAGCGAGGCAAGATCTTCCCAAGTTAGTCAGACTGGCAGAAACAGGTATCTTCAATCTTTCCAATACTGTTTCTAGAAGATACAGCTTTGAGGAGGCAGGCAAAGCATTTGAAGATCTCAACCAGGGAAAAATTGTCGGGCGAGCCGTCATTGAGATAAGATAA 1320 0.4629 MAAALLRRTSISHNARRFKFATSWCLSEALTQHFPIDKSVNENAIRRVSKGFSFYSQLAGGGGLPSFMRGAVFWESGKPLSIEEFHIPRPKAGEVLVRTKGCGVCHSDLHVIKDEIPFSSPCVLGHEITGEILEHGPLTDDKTKQRLPVGSRVVGSFIMPCGNCSYCSKGHDDLCEAFFAYNRAKGTLYDGETRLFLRSSGKPVYMYSMGGLAEYCVVPANALTVLPDSLPYTESAILGCAVFTAYGAMAHAAEVRPGDSVAVIGTGGVGSSCLQIARAFGASEIIAVDVQDEKLEKAKTFGATHTVNAAREDPIGKIIEITGGKGVDVAVEALGKPQTFSQCTQSVKDGGKAVMIGLAKAGAVGQIDINRLVRKKIKVLGSYGGRARQDLPKLVRLAETGIFNLSNTVSRRYSFEEAGKAFEDLNQGKIVGRAVIEIR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2545 439 Pfam Alcohol dehydrogenase GroES-like domain 93 223 IPR013154 -
Prci4g2545 439 Pfam Zinc-binding dehydrogenase 268 398 IPR013149 -
Prci4g2545 439 FunFam Sorbitol dehydrogenase 245 383 - -
Prci4g2545 439 SUPERFAMILY GroES-like 64 271 IPR011032 -
Prci4g2545 439 Gene3D - 245 382 - -
Prci4g2545 439 FunFam Alcohol dehydrogenase (Zinc) 72 257 - -
Prci4g2545 439 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 230 403 IPR036291 -
Prci4g2545 439 Gene3D - 72 428 - -
Prci4g2545 439 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 67 436 - -
Prci4g2545 439 SMART PKS_ER_names_mod 77 436 IPR020843 GO:0016491
Prci4g2545 439 CDD Zn_ADH10 68 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2545 Prci-Chr4 37828266 37832310 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2545 82 438 Monolignol Biosynthesis Gene Families AT4G37990 26.722 1.59e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2545 - - pcin:129308460 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci4g2545 4 37828266 37832310 Prci4g2545 4 37828266 37832310 ECH