Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci4g2544 ATGCCTCTTTTAAAAAGGAAGCCTTTTGTCTTGGCTGAGCTGCCTAAGGATTTGGAGCCCCATGAGCTTGTCCATCAAGTTCGATTTACGAAAGAAATATTTCGAGATTATCATGACTATTTGAACCGTATAAATTTGTATCGCCAGAGAGTTTGGACATGTAAGGTCACTGGGAAAACTAACTTGACTTATGAAGAGGCTATGGTGTCTGAAAGGCGTGCCACTGAAAAAGTCCAACAAATTCCCAAAGAATTAATGGCCCCTGCACTAAGGATTATTCAATACAGCATGCTTCCTTTGAGGGAACTCGCTGAAGCAATAGCTGACAAATTGCAGGAACAAGTTTATGTGGGTGCTGAGCTGCATGGAAAAAAGGATGATGGAGAGCATCCCTGCAAAATATTGAAAGTCATGCAGGAAGGAGTTGATGAATTCCGTTATGAGGTAGCTTGGCTTGACAAAAACAAGAAAACAGTTGAAAAGGCTGAAGTCAGTGCCAAGGATTTGGTGCAGAAGAAATTTCCTTTTAGCAGGAACATCTTGAAATCTTTTATTCGGGAATCTACATATCGTAATGCTCCTTGGGTAATACATGATGAATTGGCACAAAATTATGGAATCTCAACTGATATCCCAGAGGAGTTAAAAGGAAGAGCTTTCTTCAACAACGGACTTTTAATTTGCAACAAGAAAAGGAAAATTGAGGATTTAAATGGAGATGCTGAAAATTGCAAAAGGAGGAAATCAGATCAATCAAAAAATAATGGCTCCCATTTAGTGAAAGAAAATGGCCAATGTAAGGAAGAACCTATCAAATATCCGATTGATGATTTATTGGTGGAGCCTAGTCCAAATGATCCTGTTTTTGCTGATCGTCCTTCTCCATCAAGAGACTTCAATGTTCCAATTCATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTGTACTTCTTTTGGTAGGCTGTTGCGCTTGTCACCCTACTCTCTGGAAGATTTTGAAAACTCAATCTGCCACAAGGAAAGCAACGTGGTTCTCCTTATGGAATCTCATGCAGCACTCCTTCGGGTGCTCATGAAAGATGATGGTGAGTACGCTTCAGCTGTACAGAAAAGAAAACGGAAGTTTAAGATTACAATGATTAATTGGCAAGAATATTTATGCGATTTTCTAGAAATGATCAATGTTCCTGGGTTACGGCAGTTTGAAGCTACCATAAAAAGGGGACATTATGGCCTCGTTGATATCAATGCTAAACTAGAAATATTGTGCGAATTGGTCAATCAAGTTCTTGAAACCTCCATTTTTAGGGAAAGGTTGGACGAGGTTATTGAACAGCGGCAGGCACTTGGTGCTACTAGAAGAGGAGAAGCACTAGAAGATGGTAGGAAAAGAAGGGAAGAAAAGGAACGGTTGAAAGCTGAGTTTGAAAGAAATGGTAGTATGAATGGGCACTTTCAAATAAATGCAGCAACTGTCTCAACAAAAAATAATCACAATAGAGAGAACGGAGATATGAGAAAGAAAAGAAATGGAGAGAAGGAACCATCTAGGCAGGGGGATGCTTTGGGTGGAAGCATGGATAAGCATTCGAATGGTGCATCCAAAAAGTCATCTAAGAAGCTGAGTTTAGAACTGAAAGAACCAACAGAAAATGGAAATGAATCATCCAGAAAGGAATCACAGAAGCAATTAAAGGGGGAGAAGGATCCATCAGAGAAGAATAGTATAGAAGAGAGGAGAGAATATTTTGAACGAGAGATGGAAAAACGATTTGTTCGTACAAGTCCCCTTGGCAAAGACAGGCATTACAGCAGGTATTGGTGGTTTCGCCGTGATGGGAGGATCTTTGTAGAAAGTTCTGATTCTAAGGAGTGGGGCTACTACAGCACCAAGGAAGAGCTTGATGCATTGATGAGGTCACTGAATTGCAAGGGTGAGCGGGAAAGAGAATTGCAAAAGCAACTGGAAAAATATTATGCTAGAATATGTACGGAACTCCAGAAGAGATCAAAGGATCAGATACAGCAGATTGCACTAGATGAGTCTGTGCTCCGAAGGTCTACTCGTGTTCGAGCGCCACCCAGAGAAAATCCTGCCAATGCTTTCCTCAAATATGTTAACAAGTGGAAGGAAGAGTAG 2142 0.4057 MPLLKRKPFVLAELPKDLEPHELVHQVRFTKEIFRDYHDYLNRINLYRQRVWTCKVTGKTNLTYEEAMVSERRATEKVQQIPKELMAPALRIIQYSMLPLRELAEAIADKLQEQVYVGAELHGKKDDGEHPCKILKVMQEGVDEFRYEVAWLDKNKKTVEKAEVSAKDLVQKKFPFSRNILKSFIRESTYRNAPWVIHDELAQNYGISTDIPEELKGRAFFNNGLLICNKKRKIEDLNGDAENCKRRKSDQSKNNGSHLVKENGQCKEEPIKYPIDDLLVEPSPNDPVFADRPSPSRDFNVPIHCVGDLLMVWDFCTSFGRLLRLSPYSLEDFENSICHKESNVVLLMESHAALLRVLMKDDGEYASAVQKRKRKFKITMINWQEYLCDFLEMINVPGLRQFEATIKRGHYGLVDINAKLEILCELVNQVLETSIFRERLDEVIEQRQALGATRRGEALEDGRKRREEKERLKAEFERNGSMNGHFQINAATVSTKNNHNRENGDMRKKRNGEKEPSRQGDALGGSMDKHSNGASKKSSKKLSLELKEPTENGNESSRKESQKQLKGEKDPSEKNSIEERREYFEREMEKRFVRTSPLGKDRHYSRYWWFRRDGRIFVESSDSKEWGYYSTKEELDALMRSLNCKGERERELQKQLEKYYARICTELQKRSKDQIQQIALDESVLRRSTRVRAPPRENPANAFLKYVNKWKEE 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci4g2544 713 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Prci4g2544 713 Coils Coil 459 479 - -
Prci4g2544 713 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 593 659 IPR028941 -
Prci4g2544 713 SMART testlast3 303 364 IPR018501 -
Prci4g2544 713 Coils Coil 234 254 - -
Prci4g2544 713 MobiDBLite consensus disorder prediction 500 517 - -
Prci4g2544 713 MobiDBLite consensus disorder prediction 454 478 - -
Prci4g2544 713 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Prci4g2544 713 MobiDBLite consensus disorder prediction 244 263 - -
Prci4g2544 713 ProSiteProfiles WAC domain profile. 22 129 IPR013136 -
Prci4g2544 713 MobiDBLite consensus disorder prediction 482 499 - -
Prci4g2544 713 MobiDBLite consensus disorder prediction 540 578 - -
Prci4g2544 713 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 711 - -
Prci4g2544 713 Pfam DDT domain 304 361 IPR018501 -
Prci4g2544 713 MobiDBLite consensus disorder prediction 452 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci4g2544 Prci-Chr4 37820184 37826992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci4g2544 581 669 Homeobox Transcription Factor Family AT5G44180 36.735 5.01e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Prci4g2544 WAC_Acf1_DNA_bd 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci4g2544 - - qsa:O6P43_023448 1006.13